SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene468

Length: 389 nt

UniGene Fasta

>biog2_v2.0_unigene468
TCGTTGGAAGATTGCCACTGCTGCAAATTCAAGTTGGGAAAGTTAATGAGATGGTGAACTTAATCGTTTCCCAGGAGACCAGGAGGAATGCCATTGATCCGTCTATTATAAGCACTTGCGTGGAGGAGTCCTTGGCGATAGTGGTAGCACTTACTGCAAAATGTCTTTCTATAGAGCCAGATTGTCGTCCTTCAATGGAAGATGTATTGTGGAACTTGCAATATGCAGCTCAAGTGCAAGAAACATCAGGTGATGACTAGAGGCTGATGAGTATCGCTGATTGTAGCAAGCTCAAAACAACCATGCTTTCAAATTCATTTACCTGGACGTGTATTATATTCATCATATGGCCACCTTTTTCTATATCGAGAGAACTGTAATCTAGATTC

Ace file of the UniGene biog2_v2.0_unigene468

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3793	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RBL3_RICCO	-	-	3.0e-17	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	receptor protein kinase-like protein	-	-	4.50401e-25	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	4.50401e-25	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	4.50401e-25	69%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	4.50401e-25	69%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	4.50401e-25	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.50401e-25	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	4.50401e-25	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.50401e-25	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A815

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 86 - 428

Fln protein: VGRLPLLQIQVGKVNEMVNLIVSQETRRNAIDPSIISTCVEESLAIVVALTAKCLSIEPDCRPSMEDVLWNLQYAAQVQETSGDD*

Protein Length: 87

Fln nts: TCGTTGGAAGATTGCCACTGCTGCAAATTCAAGTTGGGAAAGTTAATGAGATGGTGAACTTAATCGTTTCCCAGGAGACCAGGAGGAATGCCATTGATCCGTCTATTATAAGCACTTGCGTGGAGGAGTCCTTGGCGATAGTGGTAGCACTTACTGCAAAATGTCTTTCTATAGAGCCAGATTGTCGTCCTTCAATGGAAGATGTATTGTGGAACTTGCAATATGCAGCTCAAGTGCAAGAAACATCAGGTGATGACTAG___AGGCTGATGAGTATCGCTGATTGTAGCAAGCTCAAAACAACCATGCTTTCAAATTCATTTACCTGGACGTGTATTATATTCATCATATGGCCACCTTTTTCTATATCGAGAGAACTGTAATCTAGATTC

Fln Alignment:

Contig468___VGRLPLLQIQ-VGKVNEMVNLIVSQETRRNAIDPSIISTCVEESLAIVVALTAKCLSIEPDCRPSMEDVLWNLQYAAQVQETSGDD
D5A815________________VGRAPSIENQETDIVQELLNFVTDEESRRQLVDPIISSTSVDESLATVIEITCKCLSKEPASRPSVEDVLWNLQYAAQVQDTSGGD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
210			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain