SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene458

Length: 711 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene458 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene725	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase rio2, putative n=1 Tax=Ricinus communis RepID=B9T518_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein Sb03g046610; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	84%
Blast2go	rio kinase 2	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	76%
Blast2go	ATP binding	GO:0005524	Molecular Function	76%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	RIO2 kinase, winged helix, N-terminal	IPR015285	-	-
Sma3	RIO-like kinase	IPR018934	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
350	66			33	0.997452
351	66	33			0.997452
352		33		66	0.997452
355		66	33		0.997452
357	33			66	0.997452
358			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain