SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene329

Length: 1337 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene329

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6801	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	putative plastidic ATP/ADP transporter [Oryza sativa Japonica Group]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	plastidic atp adp transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	ATP:ADP antiporter activity	GO:0005471	Molecular Function	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	86%
Blast2go	integral to membrane	GO:0016021	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	ADP/ATP carrier protein	IPR004667	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A865

Fln msg: your sequence is shorter than subject: 377 - 416

Fln protein: PKMGMLESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTMTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSEPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPCLGGILLVIVVAWLAAARSLDSQFTPLVKKDLKSKYLEGKLSAATSKVTGSLRGKQEVSYRFMSRLNSKGFIEGKYEPFVEGSAPSIDEQPQQQQQGEDVLKVSRLQPKPIQSAPVEEVHDKLVVAEEEIETKISPSSSLGNGSFQGPRGSDDDNSNGSPIKDSETSESDSSSPVA*

Protein Length: 378

Fln nts: AACCAAAGATGGGAATGTTGGAGAGTTTTAAGTTCCTATTGACTTCAAGATATGTGAGAGACCTTGCCACTTTGGTGGTTGCATACGGTATTAGCATCAACCTTGTTGAAGTCACCTGGAAGTCAAAACTGAAGGCACAGTATCCAAGTCCAAATGAATATTCCGCATTCATGGGAGATTTCTCCACAATGACAGGAATTGCTACCTTCACCATGATGTTGCTAAGCAGAGTTATATTCCGCAAATATGGTTGGGGAGTAGCCGCTACCATTACACCTACTGTGTTGCTGGCAACAGGAGTAGCTTTCTTTGGTCTCATTCTCTGCAGTGAACCGCTCACTCCCCTATTGGGTAAATTTGGCATGACACCGCTTTTGGCAGCTGTGTATGTTGGAGCTCTTCAGAACATCTTTAGCAAGAGTGCTAAATATAGTTTGTTTGATCCTTGCAAGGAGATGGCTTACATTCCTCTTGATGAAGACACCAAGGTTAAAGGAAAGGCTGCAATAGATGTGGTCTGCAATCCCTTGGGAAAGTCAGGAGGTGCACTGATTCAACAATTTCTGATTTTAACCTTTGGTTCACTCGCCAACTCCACTCCCTGCCTTGGGGGCATCTTGTTGGTTATAGTGGTGGCCTGGTTAGCAGCTGCACGATCATTGGACAGTCAGTTCACTCCATTGGTGAAGAAAGACCTTAAGAGCAAATATCTGGAGGGTAAGCTGTCTGCAGCAACGTCCAAAGTGACAGGTTCCCTCAGAGGAAAGCAGGAGGTGTCCTATAGATTTATGAGTCGTCTCAATAGTAAGGGATTCATAGAAGGTAAGTATGAACCCTTTGTGGAAGGTAGTGCCCCTTCAATTGACGAACAGCCGCAGCAACAACAGCAGGGGGAGGACGTTCTCAAAGTGTCTAGGTTACAGCCAAAACCTATCCAATCAGCTCCAGTAGAGGAGGTCCATGACAAACTTGTAGTTGCAGAGGAAGAAATAGAAACAAAAATATCACCGTCGTCTTCCCTTGGAAATGGAAGCTTTCAAGGACCAAGAGGAAGTGATGATGACAACTCAAATGGGTCTCCAATCAAGGACTCGGAGACTTCAGAGTCTGATTCGTCCAGTCCAGTGGCCTAG___ATGGATGGCTGACTCTGTTTGACGAATAGACGGATTTCATTTCAATATTCTTAGAATTTAGTTTCATATTAGATTTTGGGAATTTTGAAGATGGAAACAGATGGTGCATTAGCTGCACCCTTTTATTTTAACATTGACCAGGCTACATTAGCTCTATGGCTAAGGGCCTTGGGATAGGTGTAGTTAATTTCAGATGATGATGAT

Fln Alignment:

Contig329___PKMGMLESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTMTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSEPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPCXXXXXXXXXXXXXXXXRSLDSQFTPLVKKDLKSKYLEGKLSAATSKVTGSLRGKQEVSYRFMSRLNSKGFIEGKYEPFVEGSAPSIDEXXXXXXXGEDVLKVSRLQPKPIQSAPVEEVHDKLVVAEEEIETKISPSSSLGNGSFQGPRGSDDDNSNGSPIKXXXXXXXXXXXPVA
D5A865________________PKMGMMESFKFLLTSRYVRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTMMLLSRVIFRKYGWGVAATITPTVLLATGVAFFGLILCSDPLTPLLGKFGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFLILTFGSLANSTPYLGSILLVIVVAWLAAARSLDSQFTPLVKKDLKSKYLEGKLSAATSKLTGSLKGKQEVAYRFMSGLNSEGFIEGKYVPIVEGISTSNNEQQRQQQQGEEVVKVDRLQPKPIQSAPEEEVHDKLVAAEEEIETKTSPSSSHGNGSIQGPRGSIDDNSNGSPIKNSETSESDSSSPVA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
587		83		16	0.994512
590		83		16	0.994512
604	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1326	1337	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain