SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene246

Length: 371 nt

UniGene Fasta

>biog2_v2.0_unigene246
TGCAGTTGTGGCGCATTTGAAAAGCAGAGCAAGGATGATAAGCACATCTGAGGAAATTGCACAGGTAGGCACCATCTCAGCAAAATGGTGAAAGGGGAAATTGGTGAACTGATTGCCAAAGCAATGGAAAAAGTTGGCAAGGAGGGAGTCATAACAAGGGCAGATGGGAAGACATTGTACAATGAATTGGAGGTTGTTGAAGGAATGAAGCTAGACAGGGGTTATATATCCCCGTATTTTATCACAAATGAGAAAGCCCAAAAATGTGAATTAGAGAACCCTCTGATCTTGATACATGAAAAGAAAATTTCAAATTTGAATGCAGTTGTCCGAGCAATGGAGTTGGCCTTGAAAAAGCAAAGAGCTCTTCT

Ace file of the UniGene biog2_v2.0_unigene246

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7637	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperonin CPN60-1, mitochondrial n=3 Tax=rosids RepID=CH61_CUCMA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	chaperonin cpn60- mitochondrial-like isoform 1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	protein refolding	GO:0042026	Biological Process	92%
Blast2go	response to heat	GO:0009408	Biological Process	92%
Blast2go	mitochondrion organization	GO:0007005	Biological Process	92%
Blast2go	chaperone-mediated protein complex assembly	GO:0051131	Biological Process	92%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	92%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV22

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 298 aas, your sequence is shorter than subject: 123 - 617

Fln protein: CSCGAFEKQSKDDKHI*GNCTGRHHLSKMVKGEIGELIAKAMEKVGKEGVITRADGKTLYNELEVVEGMKLDRGYISPYFITNEKAQKCELENPLILIHEKKISNLNAVVRAMELALKKQRAL

Protein Length: 124

Fln nts: TGCAGTTGTGGCGCATTTGAAAAGCAGAGCAAGGATGATAAGCACATCTGAGGAAATTGCACAGGTAGGCACCATCTCAGCAAAATGGTGAAAGGGGAAATTGGTGAACTGATTGCCAAAGCAATGGAAAAAGTTGGCAAGGAGGGAGTCATAACAAGGGCAGATGGGAAGACATTGTACAATGAATTGGAGGTTGTTGAAGGAATGAAGCTAGACAGGGGTTATATATCCCCGTATTTTATCACAAATGAGAAAGCCCAAAAATGTGAATTAGAGAACCCTCTGATCTTGATACATGAAAAGAAAATTTCAAATTTGAATGCAGTTGTCCGAGCAATGGAGTTGGCCTTGAAAAAGCAAAGAGCTCTTCT

Fln Alignment:

Contig246___EIGELIAKAMEKVGKEGVITRADGKTLYNELEVVEGMKLDRGYISPYFITNEKAQKCELENPLILIHEKKISNLNAVVRAMELALK
A9NV22________________EIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYENCKLLLVDKKITNARDMITVLEDAIR

SNPs (tot: 4)

Position	A %	G %	T %	Probability
157	75		25	0.996473
158	25		75	0.996473
159		50	25	0.995533
160		50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain