SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene169

Length: 471 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene169
ATGGGGAAGAGCGGTGGCAATGGCCATGGCGATGACAATGGCAGGAACATCATCCCAATCTTCACTCTGCAATTTCAAATCTTGTTCTGGGACAACGCCACTTAATGGGCACAGCGGTAGAGCCGCCCAAAACCTTTCTCAGAGCTTGTGCAAATGGAGCTCCTCTTCCTCTTCAATACAAGGGACGCATGGATCAGTGCTGCTGCAGTCAACCTTGGCGAGGAGGAGGGGAAGGTCATCTTGCCCTCCGGTATGCTGCACCATGGCTCCAGAACGCACAACCTCGGATGGTCAGGCCGCGCAGATGAGACCCGATAGCTTTGGCAGATATGGAAAATACGGGGGCAAATATGTTCCCGAGACTTTAATGCACGCTTTGTCCGAGTTGGAGTCCGCATTCAACATGCTCATTAAAGATCAAGGTTTCCAGCAAGAGCTGGCTGGGATCCTAAAAGATTATGTTGGTCGAGA

Ace file of the UniGene biog2_v2.0_unigene169 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9291	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tryptophan synthase beta chain 2, chloroplastic n=1 Tax=Camptotheca acuminata RepID=TRPB_CAMAC	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	tryptophan synthase beta-subunit	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	96%
Blast2go		EC:4.2.1.2-	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	indoleacetic acid biosynthetic process	GO:0009684	Biological Process	96%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	96%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	96%
Blast2go	response to salt stress	GO:0009651	Biological Process	96%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	96%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	96%
Blast2go	tryptophan synthase activity	GO:0004834	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	96%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Tryptophan synthase, alpha chain	IPR002028	-	-
Sma3	Tryptophan synthase, beta chain, conserved site	IPR006653	-	-
Sma3	Tryptophan synthase, beta chain	IPR006654	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ55

Fln msg: Distance to subject end: 341 aas, your sequence is shorter than subject: 150 - 496

Fln protein: MAMAMTMAGTSSQSSLCNFKSCSGTTPLNGHSGRAAQNLSQSLCKWSSSSSSIQGTHGSVLLQSTLARRRGRSSCPPVCCTMAPERTTSDGQAAQMRPDSFGRYGKYGGKYVPETLMHALSELESAFNMLIKDQGFQQELAGILKDYVGR

Protein Length: 151

Fln nts: ATGGGGAAGAGCGGTGGCA_-_ATGGCCATGGCGATGACAATGGCAGGAACATCATCCCAATCTTCACTCTGCAATTTCAAATCTTGTTCTGGGACAACGCCACTTAATGGGCACAGCGGTAGAGCCGCCCAAAACCTTTCTCAGAGCTTGTGCAAATGGAGCTCCTCTTCCTCTTCAATACAAGGGACGCATGGATCAGTGCTGCTGCAGTCAACCTTGGCGAGGAGGAGGGGAAGGTCATCTTGCCCTCCGGTATGCTGCACCATGGCTCCAGAACGCACAACCTCGGATGGTCAGGCCGCGCAGATGAGACCCGATAGCTTTGGCAGATATGGAAAATACGGGGGCAAATATGTTCCCGAGACTTTAATGCACGCTTTGTCCGAGTTGGAGTCCGCATTCAACATGCTCATTAAAGATCAAGGTTTCCAGCAAGAGCTGGCTGGGATCCTAAAAGATTATGTTGGTCGAGA

Fln Alignment:

Contig169___LCNFKSCSGTTPLNGHSGRAAQNLSQSLCKWXXXXXSIQGTHGSVLLQSTLARRRGRSS----CPPVCCTMAPERTTSDGQAAQMRPDSFGRYGKYGGKYVPETLMHALSELESAFNMLIKDQGFQQELAGILKDYVGR
B8LQ55________________ICNFKSCSWPTPINGHSSRVPQNLSRSLCKWSSSSPSIQGMEGSVLLLSTLAGRKGRSSRPCRCPPVCCTMAPERATSDGQAVQMRPDSFGRFGKYGGKYVPETLMHALSELESAFYMLIKDQGFQQELAGILKDYVGR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
67	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain