SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene75

Length: 417 nt

UniGene Fasta

>biog2_v2.0_unigene75
ACTGAGCAGGTTTGTGAATGCTGTTGAGGCTGGAGGAGGCCCATCATGGCTGGTTCGGGAGGCAAGCTTCAGAAATGCAACTAGCTGGGATCATCCTTTAGGAGCACTTGTGACTGGGATTCGTCAACTTGGGCTGTCTGGCTGGCAGCAAAATGAGTGTATAGCGATTGAGAATGAGCTGCAGTGCTGGCAGAAAAAGGGTATTCCTGAGATAGAAGGAAATGAGAATGGTATCATTATCTGGGCCTTGAGAGTGAAGGCTACACTGGACAGAGCACACCGACTTGCTGAAGCATATTCAGATTCTCTCTTGCAAGTGTTCCCTACTAGAGTTCAGAAACTAGGAAATGCATTTGGAATTCCAGAGAACACTGTGAGAACCTACACAGAAGCTGAAATCCGTGCAAGTGTTGTTTT

Ace file of the UniGene biog2_v2.0_unigene75

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene375	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast alpha-glucan water dikinase, putative n=1 Tax=Ricinus communis RepID=B9RXZ3_RICCO	-	-	63%
FL-Next	sp=Phosphoglucan, water dikinase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	water dikinase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucan, water dikinase.	EC:2.7.9.5	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate phosphorylation	GO:0046835	Biological Process	74%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	74%
Blast2go	starch catabolic process	GO:0005983	Biological Process	74%
Blast2go	ligase activity	GO:0016874	Molecular Function	74%
Blast2go	carbohydrate kinase activity	GO:0019200	Molecular Function	74%
Blast2go	phosphoglucan, water dikinase activity	GO:0051752	Molecular Function	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Pyruvate phosphate dikinase, PEP/pyruvate-binding	IPR002192	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	ATP-grasp fold, subdomain 1	IPR013815	-	-
Sma3	PEP-utilising enzyme, active site	IPR018274	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6ZY51

Fln msg: Distance to subject end: 524 aas, your sequence is shorter than subject: 138 - 1196

Fln protein: LSRFVNAVEAGGGPSWLVREASFRNATSWDHPLGALVTGIRQLGLSGWQQNECIAIENELQCWQKKGIPEIEGNENGIIIWALRVKATLDRAHRLAEAYSDSLLQVFPTRVQKLGNAFGIPENTVRTYTEAEIRASVV

Protein Length: 139

Fln nts: ACTGAGCAGGTTTGTGAATGCTGTTGAGGCTGGAGGAGGCCCATCATGGCTGGTTCGGGAGGCAAGCTTCAGAAATGCAACTAGCTGGGATCATCCTTTAGGAGCACTTGTGACTGGGATTCGTCAACTTGGGCTGTCTGGCTGGCAGCAAAATGAGTGTATAGCGATTGAGAATGAGCTGCAGTGCTGGCAGAAAAAGGGTATTCCTGAGATAGAAGGAAATGAGAATGGTATCATTATCTGGGCCTTGAGAGTGAAGGCTACACTGGACAGAGCACACCGACTTGCTGAAGCATATTCAGATTCTCTCTTGCAAGTGTTCCCTACTAGAGTTCAGAAACTAGGAAATGCATTTGGAATTCCAGAGAACACTGTGAGAACCTACACAGAAGCTGAAATCCGTGCAAGTGTTGTTTT

Fln Alignment:

Contig75___LSRFVNAVEAGGGPSWLVREASFRNATSWDHPLGALVTGIRQLGLSGWQQNECIAIENELQCWQKKXXXXXXXXXXXXXXWALRVKATLDRAHRLAEAYSDSLLQVFPTRVQKLGNAFGIPENTVRTYTEAEIRASVV
Q6ZY51_______________LSRFLNALETMGGADQLAKDVGSRNVASWNDPLDALVLGVHQVGLSGWKQEECLAIGNELLAWRERDLLEKEGEEDGKTIWAMRLKATLDRARRLTAEYSDLLLQIFPPNVEILGKALGIPENSVKTYTEAEIRAGII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain