SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26279

Length: 279 nt

UniGene Fasta

>biog3_v1.0_unigene26279
TTTTCCATCACCTAAGGTATCGGACACAGTGGTGGAGCCTTATAATGCAACTCTTTCTGTACATCAATTGGTGGAGAATGCAGATGAATGCATGGTTCTTGACAATGAAGCACTTTACGACATTTGCTTCAGAACCTTGAAGTTAACAACGCCCACATTTGGAGATCTTAACCATTTAATATCTGCAACAATGAGTGGATGTACATGCTGCTTGCGGTTCCCTGGACAGTTAAACTCTGATTTGCGTAAACTTGCAGTTAACCTGATTCCATTCCCCAA

Ace file of the UniGene biog3_v1.0_unigene26279

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6388	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	beta chain	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	protein polymerization	GO:0051258	Biological Process	98%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	98%
Blast2go	microtubule-based movement	GO:0007018	Biological Process	98%
Blast2go	GTPase activity	GO:0003924	Molecular Function	98%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	98%
Blast2go	GTP binding	GO:0005525	Molecular Function	98%
Blast2go	microtubule	GO:0005874	Cellular Component	98%
Blast2go	cytoplasm	GO:0005737	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg: Distance to subject end: 182 aas, your sequence is shorter than subject: 92 - 444

Fln protein: FPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGCTCCLRFPGQLNSDLRKLAVNLIPFP

Protein Length: 93

Fln nts: TTTTCCATCACCTAAGGTATCGGACACAGTGGTGGAGCCTTATAATGCAACTCTTTCTGTACATCAATTGGTGGAGAATGCAGATGAATGCATGGTTCTTGACAATGAAGCACTTTACGACATTTGCTTCAGAACCTTGAAGTTAACAACGCCCACATTTGGAGATCTTAACCATTTAATATCTGCAACAATGAGTGGATGTACATGCTGCTTGCGGTTCCCTGGACAGTTAAACTCTGATTTGCGTAAACTTGCAGTTAACCTGATTCCATTCCCCAA

Fln Alignment:

biogeco3_mira_rep_c30260___FPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGCTCCLRFPGQLNSDLRKLAVNLIPFP
C0PT51__________________FPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain