SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26164

Length: 297 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26164
AGGCATGGAAAGAAGGAATGAGTAAGGAAGAGGCTGAGGCTCTTGTTGTCAAGTGTGTTTCTCTGGCCATTGCCAGAGACGGAGCAAGTGGAGGGGTTGTGCGCACTGTTGTTATAAACTCTGAAGGGGTGACAAGGAACTTTTATCCAGGAGACAAACTTCCTTTGTGGCATGAAGAATTGCCTCTGCGGAATTCGCTACTGGAAGAAGCATCAAGCGAGGTCGAACCTATGCGTGCTTAGAACACTGGCATGCTCTTTATGTATGACAACGTGTGTTTGGTCACAACTCTACATT

Ace file of the UniGene biog3_v1.0_unigene26164 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27331	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI	-	-	92%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type-6	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	response to zinc ion	GO:0010043	Biological Process	91%
Blast2go	peptidase activity	GO:0008233	Molecular Function	91%
Blast2go	proteasome complex	GO:0000502	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMI9

Fln msg: your sequence is shorter than subject: 80 - 233

Fln protein: AWKEGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEVEPMRA*

Protein Length: 81

Fln nts: AGGCATGGAAAGAAGGAATGAGTAAGGAAGAGGCTGAGGCTCTTGTTGTCAAGTGTGTTTCTCTGGCCATTGCCAGAGACGGAGCAAGTGGAGGGGTTGTGCGCACTGTTGTTATAAACTCTGAAGGGGTGACAAGGAACTTTTATCCAGGAGACAAACTTCCTTTGTGGCATGAAGAATTGCCTCTGCGGAATTCGCTACTGGAAGAAGCATCAAGCGAGGTCGAACCTATGCGTGCTTAG___AACACTGGCATGCTCTTTATGTATGACAACGTGTGTTTGGTCACAACTCTACATT

Fln Alignment:

biogeco3_mira_rep_c30038___AWKEGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEVEPMRA
A9NMI9__________________AWKDGMSKEEAEALVVKCVSLAIARDGASGGVVRTVVINSEGVTRNFYPGDKLPLWHEELPLRNSLLEEASSEAEPMHA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain