SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26128

Length: 233 nt

UniGene Fasta

>biog3_v1.0_unigene26128
AATGTAGTTATTTTTGGGAAAGAAAATGTCACAACAGGAGCATCGAATGACTTCCAACAAGTATCTCGTGTTGCTCGGCAGATGGTTGAAAGACTTGGTTTTAGCAAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGA

Ace file of the UniGene biog3_v1.0_unigene26128

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70180	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent zinc metalloprotease FTSH 5, chloroplastic n=4 Tax=Arabidopsis RepID=FTSH5_ARATH	-	-	7.0e-26	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	chloroplast protease	-	-	9.01679e-32	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	9.01679e-32	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		9.01679e-32	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein catabolic process	GO:0030163	Biological Process	9.01679e-32	70%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	9.01679e-32	70%
Blast2go	photoinhibition	GO:0010205	Biological Process	9.01679e-32	70%
Blast2go	protein binding	GO:0005515	Molecular Function	9.01679e-32	70%
Blast2go	ATPase activity	GO:0016887	Molecular Function	9.01679e-32	70%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	9.01679e-32	70%
Blast2go	thylakoid lumen	GO:0031977	Cellular Component	9.01679e-32	70%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	9.01679e-32	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQE3

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 77 - 264

Fln protein: NVVIFGKENVTTGASNDFQQVSRVARQMVERLGFSKKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLA

Protein Length: 78

Fln nts: AATGTAGTTATTTTTGGGAAAGAAAATGTCACAACAGGAGCATCGAATGACTTCCAACAAGTATCTCGTGTTGCTCGGCAGATGGTTGAAAGACTTGGTTTTAGCAAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGA

Fln Alignment:

biogeco3_mira_rep_c29961___VIFGKENVTTGASNDFQQVSRVARQMVERLGFSK------KDYSMATADIV-----------------DSEVRELVEKAYERAKTIITTQIDILHKL
A9NQE3__________________IVFGETEVTSGAASDLQQVTQIARQMVTAFGMSEIGPWALMDPVVQSSDVVLRMMARNSMSEKLLEDIDKTVKSITDKAYDMAKSHIRNNRAAMDKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain