SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25854

Length: 407 nt

UniGene Fasta

>biog3_v1.0_unigene25854
AATGTTATGTGTGAGGACTGCATGGCTCTCATATCCTCTCTAGGGAAATTTAACCCTAATCCAGATATCAGACTTGCTCCGCATCTCTACAGTGGCTGCTTCCAATTAATCAGCGGGTCCTTCAAAGGCACTGGCAAGCCTGGAGAAGCTCAGGAAACAGTGAAGAATACAGTTACTCTGGGCAGGGCTGGTTTCAATGCCTTCAAGCCTATCGACATTGAGATTCAGCTGAAACAGACGTATAACCATGTGGGTACAGAGGCCGAAGATGCTTACTATGTGCTAATTCAATTCTCAGTCAATTCAGATGGTATCTCACCCATTGAAGGCATGTTCATAAACAGGGGTGTGTTTAGCATATCTGGTTCAGCCATTATGGATATCAGATTTGAGTCTTCTGCTACATT

Ace file of the UniGene biog3_v1.0_unigene25854

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11914	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAP_fibrillin domain containing protein	-	-	4.0e-05	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	0.0	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD02

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 135 - 284

Fln protein: NVMCEDCMALISSLGKFNPNPDIRLAPHLYSGCFQLISGSFKGTGKPGEAQETVKNTVTLGRAGFNAFKPIDIEIQLKQTYNHVGTEAEDAYYVLIQFSVNSDGISPIEGMFINRGVFSISGSAIMDIRFESSAT

Protein Length: 136

Fln nts: AATGTTATGTGTGAGGACTGCATGGCTCTCATATCCTCTCTAGGGAAATTTAACCCTAATCCAGATATCAGACTTGCTCCGCATCTCTACAGTGGCTGCTTCCAATTAATCAGCGGGTCCTTCAAAGGCACTGGCAAGCCTGGAGAAGCTCAGGAAACAGTGAAGAATACAGTTACTCTGGGCAGGGCTGGTTTCAATGCCTTCAAGCCTATCGACATTGAGATTCAGCTGAAACAGACGTATAACCATGTGGGTACAGAGGCCGAAGATGCTTACTATGTGCTAATTCAATTCTCAGTCAATTCAGATGGTATCTCACCCATTGAAGGCATGTTCATAAACAGGGGTGTGTTTAGCATATCTGGTTCAGCCATTATGGATATCAGATTTGAGTCTTCTGCTACATT

Fln Alignment:

biogeco3_mira_rep_c29267___MCEDCMALISSLGKFNPNPDIRLAPHLYSGCFQLISGSFKGTGKPGEAQETVKNTVTLGRAGFNAFKPIDIEIQLKQTYNHVGTEAEDAYYVLIQFSVNSDGISPIEGMFINRGVFSISGSAIMDIRFESSA
D5AD02__________________ICEDSMALISSLEKLNPNPDVRLAPHLYSGCFQLISGSFKGTGKPGEAQKIVENTITLGRAAFNAFKPTDIEIQLKQTYNHVGIEAEDAYNVLIQFSVSSDGISPIEGMFINRGVFSISGSAKMDIIFESSA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain