SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25755

Length: 423 nt

UniGene Fasta

>biog3_v1.0_unigene25755
AATGTAACTTTATATGGGTAGTCATACGTTCCTTCCTTCCTTTGCTTCTGTACCTGCTTTTTCCTTGGCACTACAGAGAGGATGGAGTGAATCTGCTAGTCCGAATATTAGAGGTCCCCCAGCCTTGGTATATAGGCTTTCGGTGCTAGAGGAGAAACTAACGGTAGCCTACAGGGCCACGACAGAAGGTAGGTTTAGTGAAGCACTGAGGCTATTTCTGAACATTCTGCATACAATTCCAGTTATTGTGGTAGACTCAAGAAAGGAAATTGATGAGGTAAAAGAATTGATTGGAATTGCTAAAGAGTATGTTCTTGGTCTTCGGATGGAGGTCAAGAGAAAAGAAATAAAGGACGATGCTGTTCGGCAGCAGGAGCTTGCCGCTTATTTTACTCATTGTAATCTGCATTAAGCTCATACATT

Ace file of the UniGene biog3_v1.0_unigene25755

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6461	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD	-	-	68%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	coatomer alpha	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	82%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	82%
Blast2go	myosin heavy chain kinase activity	GO:0016905	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	transporter activity	GO:0005215	Molecular Function	82%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	82%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	82%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 122 aas, your sequence is shorter than subject: 137 - 1216

Fln protein: M*LYMGSHTFLPSFASVPAFSLALQRGWSESASPNIRGPPALVYRLSVLEEKLTVAYRATTEGRFSEALRLFLNILHTIPVIVVDSRKEIDEVKELIGIAKEYVLGLRMEVKRKEIKDDAVRQQELAAYFTHCNLH*

Protein Length: 138

Fln nts: AATGTAACTTTATATGGGTAGTCATACGTTCCTTCCTTCCTTTGCTTCTGTACCTGCTTTTTCCTTGGCACTACAGAGAGGATGGAGTGAATCTGCTAGTCCGAATATTAGAGGTCCCCCAGCCTTGGTATATAGGCTTTCGGTGCTAGAGGAGAAACTAACGGTAGCCTACAGGGCCACGACAGAAGGTAGGTTTAGTGAAGCACTGAGGCTATTTCTGAACATTCTGCATACAATTCCAGTTATTGTGGTAGACTCAAGAAAGGAAATTGATGAGGTAAAAGAATTGATTGGAATTGCTAAAGAGTATGTTCTTGGTCTTCGGATGGAGGTCAAGAGAAAAGAAATAAAGGACGATGCTGTTCGGCAGCAGGAGCTTGCCGCTTATTTTACTCATTGTAATCTGCATTAAGCTCATACATT

Fln Alignment:

biogeco3_mira_rep_c28866___LYMGSHTFLPSFASVPAFSLALQRGWSESASPNIRGPPALVYRLSVLEEKLTVAYRATTEGRFSEALRLFLNILHTIPVIVVDSRKEIDEVKELIGIAKEYVLGLRMEVKRKEIKDDAVRQQELAAYFTHCNLH*AH
Q94A40__________________LFNGSHSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKSGYKATTTGKFTEALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPH

SSRs (tot: 1)

Start position	End position	Sequence	Length
29	42	TTCC TTCC TTCC TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain