SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25598

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25598
AATGTGCATTGCCAGGGTCTTTTCCTGAAAACTTCAGCTTTAAAACCATGAATTCAAAGAAGCTCACAATATCCTATCCATGTGTTATGTTGAATGTTGATGTTGCAAGGAACAATACAAATGACCAGTATCAGACCTTGGATGATCCTGTCCAACGGACATACAACACAAGGAGTGAGTGTTCTATTGAGTTTGAAGTAGATGGACCATACAAGGCGATGATTCTACCAGCCTCGAAGGAAGAAGGTGTTTTAATTAAGAAGCGTTATGCTGTTTTCAATGATGATGGAACACTAGCTGAGCTTAAAGGTTTTGAAATAAAGAGGCGAGGTGAATTGAAGCTTATCAAAGTTTTCCAGGCTGAAGTGTTTGATAAATTTCTTGATGGGATGACATTAGAGGAATGCTACGCAGCAGTAGCCTCTGTGGCAAATCGTTACATT

Ace file of the UniGene biog3_v1.0_unigene25598 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene42925	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=2 Tax=Oryza sativa RepID=Q6K777_ORYSJ	-	-	87%
FL-Next	sp=DNA polymerase; Oryza sativa subsp. indica (Rice).	-	-	87%
Blast2go	dna polymerase epsilon catalytic subunit a	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	92%
Blast2go	positive regulation of S phase of mitotic cell cycle	GO:0045750	Biological Process	92%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	92%
Blast2go	transferase activity	GO:0016740	Molecular Function	92%
Blast2go	epsilon DNA polymerase complex	GO:0008622	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase sigma-70 factor	IPR000943	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA polymerase epsilon, catalytic subunit A, C-terminal	IPR013697	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8AIL6

Fln msg: Distance to subject end: 1139 aas, your sequence is shorter than subject: 147 - 2081

Fln protein: CALPGSFPENFSFKTMNSKKLTISYPCVMLNVDVARNNTNDQYQTLDDPVQRTYNTRSECSIEFEVDGPYKAMILPASKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLDGMTLEECYAAVASVANRYI

Protein Length: 148

Fln nts: AATGTGCATTGCCAGGGTCTTTTCCTGAAAACTTCAGCTTTAAAACCATGAATTCAAAGAAGCTCACAATATCCTATCCATGTGTTATGTTGAATGTTGATGTTGCAAGGAACAATACAAATGACCAGTATCAGACCTTGGATGATCCTGTCCAACGGACATACAACACAAGGAGTGAGTGTTCTATTGAGTTTGAAGTAGATGGACCATACAAGGCGATGATTCTACCAGCCTCGAAGGAAGAAGGTGTTTTAATTAAGAAGCGTTATGCTGTTTTCAATGATGATGGAACACTAGCTGAGCTTAAAGGTTTTGAAATAAAGAGGCGAGGTGAATTGAAGCTTATCAAAGTTTTCCAGGCTGAAGTGTTTGATAAATTTCTTGATGGGATGACATTAGAGGAATGCTACGCAGCAGTAGCCTCTGTGGCAAATCGTTACATT

Fln Alignment:

biogeco3_mira_c27650___CALPGSFPENFSFKTMNSKKLTISYPCVMLNVDVARNNTNDQYQTLDDPVQRTYNTRSECSIEFEVDGPYKAMILPASKEEGVLIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLDGMTLEECYAAVASVANRYI
B8AIL6__________________CVLPGSFPENFTFKTNAGKKLTISYPCVMLNVDVARNNTNDQYQTLNDPVNKLYTTHSECSIEFEVDGPYKAMILPASKEEGVLLKKRYAVFNEDGTLAELKGFEIKRRGELKLIKVFQAEVFDRFLHGSTLEECYTAVASVANRWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain