SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25535

Length: 286 nt

UniGene Fasta

>biog3_v1.0_unigene25535
AAAAGAAGAAAATCCCTTTTCTTTTGTGAGTGATACTTGAGTTGGTATCTTACAGGCTCGGCTCTTATCGCTCATCTGTTGATGGTCCGGGGGGATTGATCCACGAGCTCATCCAAGTCTGCTGCAGGAGAGGCTAGATCTGAAGGCTAGCAGTGGAAGGGCATTCGAGAGTTTGTGGAGCTAGGTTAGCGCAATGGCTTTTGCTCGATGAACCACTGTATCCTATAGCTATTCTGATAGACGAACTGAAAAATGAGGATATTCATTTGCGACTAAATTCTGTTCG

Ace file of the UniGene biog3_v1.0_unigene25535

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7638	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform n=23 Tax=Magnoliophyta RepID=2AAB_ARATH	-	-	79%
FL-Next	sp=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	78%
Blast2go	serine threonine protein phosphatase 2a regulatory subunit	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	regulation of phosphorylation	GO:0042325	Biological Process	91%
Blast2go	binding	GO:0005488	Molecular Function	91%
Blast2go	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	HEAT	IPR000357	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q38950

Fln msg: Distance to subject end: 556 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 47 - 587

Fln protein: RLAVEGHSRVCGARLAQWLLLDEPLYPIAILIDELKNEDIHLRLNSV

Protein Length: 48

Fln nts: AAAAGAAGAAAATCCCTTTTCTTTTGTGAGTGATACTTGAGTTGGTATCTTACAGGCTCGGCTCTTATCGCTCATCTGTTGATGGTCCGGGGGGATTGATCCACGAGCTCATCCAAGTCTGCTGCAGGAGAGGCTAGATCTGAAGGCTAGCAGTGGAAGGGCATTCGAGAGTTTGTGGAGCTAGGTTAGCGCAATGGCTTTTGCTCGATGAACCACTGTATCCTATAGCTATTCTGATAGACGAACTGAAAAATGAGGATATTCATTTGCGACTAAATTCTGTTCG

Fln Alignment:

biogeco3_mira_c27569___LLDEPLYPIAILIDELKNEDIHLRLNSV
Q38950__________________MIDEPLYPIAVLIDELKNDDIQLRLNSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain