SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25402

Length: 201 nt

UniGene Fasta

>biog3_v1.0_unigene25402
GCTCAGATTGCTGGGTTTTTCATAGTAGAAGACTGTGTTTTGAGGATGGCTGGAGGATTAATCTCCACTCCCCAGGTGGAAATAATGTGGGATACAGCTGTAGCAAAGATGAGCTATATTTTAGAGGATCAGTTTTCGCGTATGCAGGTTGCAAGCCATCTTCTGCTTAATCAAGGACTATGTGAGTCTACTTGGTGTGAC

Ace file of the UniGene biog3_v1.0_unigene25402

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11087	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pfam04091, Sec15, Exocyst complex subunit Sec15-like	-	-	34%
FL-Next	sp=Probable exocyst complex component 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	79%
Blast2go	vesicle docking involved in exocytosis	GO:0006904	Biological Process	79%
Blast2go	pollen tube growth	GO:0009860	Biological Process	79%
Blast2go	exocyst	GO:0000145	Cellular Component	79%
Blast2go	cytosol	GO:0005829	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	Exocyst complex subunit Sec15-like	IPR007225	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	Vacuolar protein sorting-associated protein 51	IPR014812	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXX6

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 67 - 790

Fln protein: AQIAGFFIVEDCVLRMAGGLISTPQVEIMWDTAVAKMSYILEDQFSRMQVASHLLLNQGLCESTWCD

Protein Length: 68

Fln nts: GCTCAGATTGCTGGGTTTTTCATAGTAGAAGACTGTGTTTTGAGGATGGCTGGAGGATTAATCTCCACTCCCCAGGTGGAAATAATGTGGGATACAGCTGTAGCAAAGATGAGCTATATTTTAGAGGATCAGTTTTCGCGTATGCAGGTTGCAAGCCATCTTCTGCTTAATCAAGGACTATGTGAGTCTACTTGGTGTGAC

Fln Alignment:

biogeco3_mira_c27397___AQIAGFFIVEDCVLRMAGGLISTPQVEIMWDTAVAKMSYILEDQFSRMQVASHLLL
Q9LXX6__________________AQVAGYFIVEDRVIRTAGDFLLADQVETMWETAISKIVAILENQFARMDSPTHLLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain