SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25281

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene25281
AATGTTTCCTGAGTTGCAGGCATGCATGCAGAGGCTTCTTTGGCTACGGACATCAGGTTATGTATCGACAACTAGCAGCATGGATGGTCTATGGTATCCTCCAAGATCAATATGGGGAATTTTTCATCAGCAGACAGCATGGCGGGGATATGCCACATGGTTCACAACAGTCTGATCTTGCCGTAGAGCAATCAACATGGAATGCTCCGGAAGACACAAAGTTGTCTGATTGGACATT

Ace file of the UniGene biog3_v1.0_unigene25281

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene158	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	gamma-tubulin complex component 4-like protein [Arabidopsis thaliana] sp\|Q9M350.2\|GCP4_ARATH RecName: Full=Gamma-tubulin complex component 4 homolog gb\|AAS76714.1\| At3g53760 [Arabidopsis thaliana] gb\|AAS92328.1\| At3g53760 [Arabidopsis thaliana] gb\|AEE7913	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	gamma-tubulin complex component 4 homolog	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	79%
Blast2go	growth	GO:0040007	Biological Process	79%
Blast2go	microtubule nucleation	GO:0007020	Biological Process	79%
Blast2go	tubulin binding	GO:0015631	Molecular Function	79%
Blast2go	microtubule organizing center	GO:0005815	Cellular Component	79%
Blast2go	tubulin complex	GO:0045298	Cellular Component	79%
Blast2go	spindle pole	GO:0000922	Cellular Component	79%
Blast2go	microtubule	GO:0005874	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Spc97/Spc98	IPR007259	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW25

Fln msg: Distance to subject end: 485 aas, your sequence is shorter than subject: 78 - 754

Fln protein: CFLSCRHACRGFFGYGHQVMYRQLAAWMVYGILQDQYGEFFISRQHGGDMPHGSQQSDLAVEQSTWNAPEDTKLSDWT

Protein Length: 79

Fln nts: AATGTTTCCTGAGTTGCAGGCATGCATGCAGAGGCTTCTTTGGCTACGGACATCAGGTTATGTATCGACAACTAGCAGCATGGATGGTCTATGGTATCCTCCAAGATCAATATGGGGAATTTTTCATCAGCAGACAGCATGGCGGGGATATGCCACATGGTTCACAACAGTCTGATCTTGCCGTAGAGCAATCAACATGGAATGCTCCGGAAGACACAAAGTTGTCTGATTGGACATT

Fln Alignment:

biogeco3_mira_c27235___YGHQVMYRQLAAWMVYGILQDQYGEFFISRQHGGDMPHGSQQSDLAVEQSTWNAPEDTKLSDW
A9NW25__________________HGHQVMYRQLAAWMVYGILQDQYGEFFISRQHGGDMPHGSQQSDLAIEKSTWNTLEDTKLSDW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain