SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25007

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25007
GGTAGTCAACGCAGAGTACGCGGGGAGAGAGGCCTACAATTTGGAACGAGTTGTCCCAAGAATTCGTGTAGTAGTACTATATTGAAAGGGTATCCAAAGAGCATTAACATAGAATTGGCTGAAACAATGGCTGGTGCTAGATCATTTATATGCTCCAACGCCCTTTGGAGTTCAAGCAGCATTGGCATCAATTCTTCTGTGAGCAATGGGCATGGTATCGCTAACAACAATAACTACCTTAAGTTCATTCTACCTCCTGCTGCAGTTACGCAGAAAAGGAAGCAGCAGGAGGAAGCCAATCATGGAACCTCCCAGAGCAGTTGTCATGTCTACTAAACAATCTGAAAGCACCCTCCAGTATAAAAAGCTTGGGGACTCCGACTTACTCATCAGCGAAATCACACTTGGAACAACATT

Ace file of the UniGene biog3_v1.0_unigene25007 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene457	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Oxidoreductase, putative n=1 Tax=Ricinus communis RepID=B9T5E8_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein tas-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldehyde reductase.	EC:1.1.1.21	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	83%
Blast2go	Fructose and mannose metabolism	00051	83%
Blast2go	Galactose metabolism	00052	83%
Blast2go	Glycerolipid metabolism	00561	83%
Blast2go	Pyruvate metabolism	00620	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	alditol:NADP+ 1-oxidoreductase activity	GO:0004032	Molecular Function	83%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE2

Fln msg: Overlapping hits, possible frame ERROR between 288 and 272, Distance to subject end: 334 aas, your sequence is shorter than subject: 97 - 431

Fln protein: MAGARSFICSNALWSSSSIGINSSVSNGHGIANNNNYLKFILPPAAVTxxxxxxxRKPIMEPPRAVVMSTKQSESTLQYKKLGDSDLLISEITLGTT

Protein Length: 98

Fln nts: GGTAGTCAACGCAGAGTACGCGGGGAGAGAGGCCTACAATTTGGAACGAGTTGTCCCAAGAATTCGTGTAGTAGTACTATATTGAAAGGGTATCCAAAGAGCATTAACATAGAATTGGCTGAAACA_-_ATGGCTGGTGCTAGATCATTTATATGCTCCAACGCCCTTTGGAGTTCAAGCAGCATTGGCATCAATTCTTCTGTGAGCAATGGGCATGGTATCGCTAACAACAATAACTACCTTAAGTTCATTCTACCTCCTGCTGCAGTTACGxxxxxxxxxxxxxxxxxxxxxAGGAAGCCAATCATGGAACCTCCCAGAGCAGTTGTCATGTCTACTAAACAATCTGAAAGCACCCTCCAGTATAAAAAGCTTGGGGACTCCGACTTACTCATCAGCGAAATCACACTTGGAACAACATT

Fln Alignment:

biogeco3_mira_c26864___MAGARSFICSNALWXXXXXXXXXXXXXGHGIANNNNYLKFILPPAAVTxxxxxxRKPIMEPPRAVVMSTKQSESTLQYKKLGDSDLLISEITLGT
B8LKE2__________________MAGATSFICSNALWSSCSIGINSSLSNGYGTGNSNNHLKFIPPPAAVVxxxxxxRRQIMEPLRAAVMSTKQSESTLQYKKLGDSDLVISEITLGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain