SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24737

Length: 202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24737
AACTAGCGAGCGGGGTCCTTTCTGTTCAAGCAAGAGCAAACAGGAGAGATCTGCAAGGATTTGAAGCGGAGTTTGGAGTAATCGGAGGCAGTGAGTGAGCAAACCAGAGAGGAGAATAACAGAGGCATGGAGTGTGTATTCGGGTTGGTCGGGGATGGCTTCGCTCTGATAGCAGGCGACACCTCGGCAGTGCAGAGACATT

Ace file of the UniGene biog3_v1.0_unigene24737 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15810	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NKA9_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	proteasome subunit beta type	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	peptidase activity	GO:0008233	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	proteasome complex	GO:0000502	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKA9

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 25 - 215

Fln protein: MECVFGLVGDGFALIAGDTSAVQRH

Protein Length: 26

Fln nts: AACTAGCGAGCGGGGTCCTTTCTGTTCAAGCAAGAGCAAACAGGAGAGATCTGCAAGGATTTGAAGCGGAGTTTGGAGTAATCGGAGGCAGTGAGTGAGCAAACCAGAGAGGAGAATAACAGAGGC_-_ATGGAGTGTGTATTCGGGTTGGTCGGGGATGGCTTCGCTCTGATAGCAGGCGACACCTCGGCAGTGCAGAGACATT

Fln Alignment:

biogeco3_mira_c25048___MECVFGLVGDGFALIAGDTSAVQ
A9NKA9__________________MECVFGLVGDGFTLIAGDTSAVQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
67	66			33	0.997452
160		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain