SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24519

Length: 262 nt

UniGene Fasta

>biog3_v1.0_unigene24519
AATGTCATGCTCAGTGGTGGCGGGTTAGGACAATAATTCTGGGCAGAGGCGGTGGATACTGCATGTTACCTGATCAATAGATCACCTTCATCAGCGTTGGAGGATAAGACTCCACAAGAAGTATGGACTGGTAAGAAACTGTTCTTTCACATCTGAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAACGAACCAAGTTGGATAGTAAATCTGAAAAGTGCATCTTTATTGGGTATAAGGATGGTTTAAA

Ace file of the UniGene biog3_v1.0_unigene24519

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7355	1/2
SustainPine v2.0	sp_v2.0_unigene83737	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	gag-pol polyprotein	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	63%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Separated hits, possible frame ERROR between 138 and 144, Distance to subject end: 70 aas, your sequence is shorter than subject: 87 - 407

Fln protein: NVMLSGGGLGQ*FWAEAVDTACYLINRSPSSALEDKTPQEVWTGKxxxLSHLRVFGCDAYVHVPKEKRTKLDSKSEKCIFIGYKDGL

Protein Length: 88

Fln nts: AATGTCATGCTCAGTGGTGGCGGGTTAGGACAATAATTCTGGGCAGAGGCGGTGGATACTGCATGTTACCTGATCAATAGATCACCTTCATCAGCGTTGGAGGATAAGACTCCACAAGAAGTATGGACTGGTAAGAAxxxxxxTCTTTCACATCTGAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAACGAACCAAGTTGGATAGTAAATCTGAAAAGTGCATCTTTATTGGGTATAAGGATGGTTTAAA

Fln Alignment:

biogeco3_mira_c24203___MLSGGGLGQ*FWAEAVDTACYLINRSPSSALEDKTPQEVWTGKKxxLSHLRVFGCDAYVHVPKEKRTKLDSKSEKCIFIGYKD
B8LKX7__________________MLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKxxVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain