SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24263

Length: 324 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24263
CGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTAAAACGTGAAAACGTGGGCACTAACGGGCATTTTCCGGTGCAAAAAGTTCACGAGCGTTTTGATGAACGTACGAGCGCGGTGGCCAATGGAAATGGCAACAATACAAGAAGCTCGGCGGGTTTGGCCGTCTATGAACAATTTTACGCCAGGAAAATAGTGGAACAGAGTTTGCTGGTGGGGCTGCAGGGAGATACACAGAAAAACCGCAGAAAGGAGTGTTTCCAACCTTTGAGTCCGTTGAAATGCGTAACTTGGCAGAAAGTATCAGTCGGGATATTCACATT

Ace file of the UniGene biog3_v1.0_unigene24263 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1716	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	37%
Blast2go	katanin p60 atpase-containing subunit a-like 2-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	protein metabolic process	GO:0019538	Biological Process	79%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Peptidase M18	IPR001948	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C6TJT2

Fln msg: Separated hits, possible frame ERROR between 181 and 238, Distance to subject end: 81 aas, atg_distance in limit (1-15): atg_distance = 13, W2: There is no M at the beginning, your sequence is shorter than subject: 108 - 198

Fln protein: EDFEEVYDAKFGVKRENVGTNGHFPVQKVHERFDERTSAVANGNGNNTRSSAGLAVYEQxxxxxxxxxxxxxxxxxxxxEKPQKGVFPTFESVEMRNLAESISRDIHI

Protein Length: 109

Fln nts: CGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTAAAACGTGAAAACGTGGGCACTAACGGGCATTTTCCGGTGCAAAAAGTTCACGAGCGTTTTGATGAACGTACGAGCGCGGTGGCCAATGGAAATGGCAACAATACAAGAAGCTCGGCGGGTTTGGCCGTCTATGAACAATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAAAAACCGCAGAAAGGAGTGTTTCCAACCTTTGAGTCCGTTGAAATGCGTAACTTGGCAGAAAGTATCAGTCGGGATATTCACATT

Fln Alignment:

biogeco3_mira_c23837___EDFEEVYDAKFGVKRENVGTNGHFPVQKVHERFDERTSAVANGNGNN---------TRSSAGLAVYEQFxxxxxxxxxxxxxxxxxxxEKPQKGVFPTFESVEMRNLAESISRDI
C6TJT2__________________QDFKLCYDAKFG--RKKVAENGD----------DAAGKAVSNGNGNSVTVAIVSNGNKRASEMAVYEQFxxxxxxxxxxxxxxxxxxxERPQKSLLPPFESAEMRALAESLSRDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain