SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24262

Length: 284 nt

UniGene Fasta

>biog3_v1.0_unigene24262
AATGTTTCTTTTGGATTCAAAAGGAAATCTGAAGATCTCAGATTTTGGTCTTAGTGCACTTTCACAGCAAGTGAAGGAAGATGGGCTGTTGCATACTGCTTGTGGAACCCCCAACTATGTTGCCCCAGAGGTCATTGTGGACAAGGGATATGATGGTGCTAAAGCTGATCTGTGGTCTTGTGGAGTCATTCTCTTTGTCCTCATGGCTGGCTATTTACCATTTGATGAACCCAACATCATAGCACTTTATAAGAAGATATACAGAGCAGATTTCACTTGACATT

Ace file of the UniGene biog3_v1.0_unigene24262

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28504	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 03 n=2 Tax=Selaginella moellendorffii RepID=C4P7R5_SELML	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	84%
Blast2go	response to water deprivation	GO:0009414	Biological Process	84%
Blast2go	potassium ion import	GO:0010107	Biological Process	84%
Blast2go	response to nutrient	GO:0007584	Biological Process	84%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT62

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, your sequence is shorter than subject: 93 - 288

Fln protein: MFLLDSKGNLKISDFGLSALSQQVKEDGLLHTACGTPNYVAPEVIVDKGYDGAKADLWSCGVILFVLMAGYLPFDEPNIIALYKKIYRADFT*

Protein Length: 94

Fln nts: AATGTTTCTTTTGGATTCAAAAGGAAATCTGAAGATCTCAGATTTTGGTCTTAGTGCACTTTCACAGCAAGTGAAGGAAGATGGGCTGTTGCATACTGCTTGTGGAACCCCCAACTATGTTGCCCCAGAGGTCATTGTGGACAAGGGATATGATGGTGCTAAAGCTGATCTGTGGTCTTGTGGAGTCATTCTCTTTGTCCTCATGGCTGGCTATTTACCATTTGATGAACCCAACATCATAGCACTTTATAAGAAGATATACAGAGCAGATTTCACTTGACATT

Fln Alignment:

biogeco3_mira_c23836___LLDSKGNLKISDFGLSALSQQVKEDGLLHTACGTPNYVAPEVIVDKGYDGAKADLWSCGVILFVLMAGYLPFDEPNIIALYKKIYRADFT
C0PT62__________________LLDAYGNLKVSDFGLSALPQQIMEDGLLHTTCGTPNYVAPEVINDKGYDGATADLWSCGVILFVLMAGYLPFDESNLLTLYKKIYKADFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain