SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24121

Length: 362 nt

UniGene Fasta

>biog3_v1.0_unigene24121
AATGTGCCTTGTCTATGTTGAAATGCTGGGTCACGATTCCTCCTTCGGCTACATCCATGCTGTCAAGATGACCCACGATGACTCCCTGCTGCTTAAGAAGACTGGGTATCTTGCAGTTACGCTGTTCCTGAGCGAGGATCACGATCTTATAATATTGATTGTCAATACCATACAGAAGGACTTGAAGTCGGATAATTATCTGGTTGTCTGTGCTGCGCTTACCGCAGTCTGTAAGTTGATTAACGAGGAGACGATACCGGCTGTACTCCCGCAAATTGTCGAGCTCTTGGGTCACCCGAAAGAGTTGGTGAGGAAGAAGGCTGTTATGGCCTTGCACAGGTTCTACCAGAAGGCGTCCTCCA

Ace file of the UniGene biog3_v1.0_unigene24121

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4097	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AP-1 complex subunit gamma-2, putative n=1 Tax=Ricinus communis RepID=B9S1S1_RICCO	-	-	87%
FL-Next	sp=AP-4 complex subunit epsilon; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	ap-4 complex subunit epsilon-1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	92%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	92%
Blast2go	clathrin binding	GO:0030276	Molecular Function	92%
Blast2go	membrane coat	GO:0030117	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-4, epsilon subunit	IPR017109	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L7A9

Fln msg: Distance to subject end: 748 aas, your sequence is shorter than subject: 120 - 938

Fln protein: MCLVYVEMLGHDSSFGYIHAVKMTHDDSLLLKKTGYLAVTLFLSEDHDLIILIVNTIQKDLKSDNYLVVCAALTAVCKLINEETIPAVLPQIVELLGHPKELVRKKAVMALHRFYQKASS

Protein Length: 121

Fln nts: AATGTGCCTTGTCTATGTTGAAATGCTGGGTCACGATTCCTCCTTCGGCTACATCCATGCTGTCAAGATGACCCACGATGACTCCCTGCTGCTTAAGAAGACTGGGTATCTTGCAGTTACGCTGTTCCTGAGCGAGGATCACGATCTTATAATATTGATTGTCAATACCATACAGAAGGACTTGAAGTCGGATAATTATCTGGTTGTCTGTGCTGCGCTTACCGCAGTCTGTAAGTTGATTAACGAGGAGACGATACCGGCTGTACTCCCGCAAATTGTCGAGCTCTTGGGTCACCCGAAAGAGTTGGTGAGGAAGAAGGCTGTTATGGCCTTGCACAGGTTCTACCAGAAGGCGTCCTCCA

Fln Alignment:

biogeco3_mira_c23638___LVYVEMLGHDSSFGYIHAVKMTHDDSLLLKKTGYLAVTLFLSEDHDLIILIVNTIQKDLKSDNYLVVCAALTAVCKLINEETIPAVLPQIVELLGHPKELVRKKAVMALHRFYQKASS
Q8L7A9__________________LVYIEMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALHRFHRKSPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain