SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24114

Length: 359 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24114
CCTCAACTCTCCAGCCATTTGAGTTCTCCAGAGGAAGACAGACATTCAAAGCTCTGCAGATCAAGTTTTAGCAAATCGTTCTACAATTGTTTTAGGCTTTGAAATTCGTTAGGGTTTGGTCCAGTACTTACAGAGAATAGAAAACATTGCCGGTTCCTGGAGTTGGATAGAAATGGACGAGGTGTGGGAGAGAGCGGTGGAAGCGGCCTTGGACGGGCAGACGGATGTATCCTCAGCTCGCAGTTTAACTCTGGATGGTGCAGTTAAATGCGTCCACGGTCGCCTCCCGCCGCCATCTCTGCTGGAAAAATTTGAGCAGTTAAAGCAGCTATCCATTGCGAATGTACAGTTTCGACTCT

Ace file of the UniGene biog3_v1.0_unigene24114 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8696	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	acidic leucine-rich nuclear phosphoprotein 32-related protein [Arabidopsis thaliana] sp\|Q9SCQ7.1\|AN32_ARATH RecName: Full=Acidic leucine-rich nuclear phosphoprotein 32-related protein; AltName: Full=ANP32/acidic nuclear phosphoprotein-like protein emb\|CAB	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	protein	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	U2A'/phosphoprotein 32 family A, C-terminal	IPR003603	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ4

Fln msg: Distance to subject end: 360 aas, your sequence is shorter than subject: 62 - 421

Fln protein: MDEVWERAVEAALDGQTDVSSARSLTLDGAVKCVHGRLPPPSLLEKFEQLKQLSIANVQFRL

Protein Length: 63

Fln nts: CCTCAACTCTCCAGCCATTTGAGTTCTCCAGAGGAAGACAGACATTCAAAGCTCTGCAGATCAAGTTTTAGCAAATCGTTCTACAATTGTTTTAGGCTTTGAAATTCGTTAGGGTTTGGTCCAGTACTTACAGAGAATAGAAAACATTGCCGGTTCCTGGAGTTGGATAGAA_-_ATGGACGAGGTGTGGGAGAGAGCGGTGGAAGCGGCCTTGGACGGGCAGACGGATGTATCCTCAGCTCGCAGTTTAACTCTGGATGGTGCAGTTAAATGCGTCCACGGTCGCCTCCCGCCGCCATCTCTGCTGGAAAAATTTGAGCAGTTAAAGCAGCTATCCATTGCGAATGTACAGTTTCGACTCT

Fln Alignment:

biogeco3_mira_c23630___MDEVWERAVEAALDGQTDVSSARSLTLDGAVKCVHGRLPPPSLLEKFEQLKQLSIAN
A9NVZ4__________________MEKAWEKAVEAARGGQNP-SEIVSLTLDGALKGTPCRLPPAALFEQFPRLQHLSLAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain