SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24042

Length: 339 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24042
TGGGACTGCAATACAGCAGGATTGCTATACAGATCGGCCATGGGAACGACTCCGAGCCTGCAAAGATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAGCACGAGCATCTGGTGGCATATTATTGCCGTCTGTATGCAATGGAACGAGGACTGAAGATTCCCCAAAAGGATCGAACCAAAACAACGAGCGCTCTGCTGGTTTCCTTGATGAACCAGCTGGAGAAGGACAGGAAGACATTGACATTGGGTCCTGATGATGGTCTTTATGTGGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAACAAGATAGAGCAGGACGACATT

Ace file of the UniGene biog3_v1.0_unigene24042 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17502	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein VTA1 [Arabidopsis thaliana] emb\|CAB36521.1\| putative protein [Arabidopsis thaliana] emb\|CAB79530.1\| putative protein [Arabidopsis thaliana] gb\|AAK82482.1\| AT4g26750/F10M23_90 [Arabidopsis thaliana] gb\|AAM16165.1	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF605	IPR006745	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A5AW69

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, W2: There is no M at the beginning,

Fln protein: GLQYSRIAIQIGHGNDSEPAKILLPYLQRADELQKHEHLVAYYCRLYAMERGLKIPQKDRTKTTSALLVSLMNQLEKDRKTLTLGPDDGLYVEGFASNVFAKADKQDRAGRH

Protein Length: 113

Fln nts: TGGGACTGCAATACAGCAGGATTGCTATACAGATCGGCCATGGGAACGACTCCGAGCCTGCAAAGATTTTACTCCCTTATCTTCAGAGAGCCGATGAGCTGCAGAAGCACGAGCATCTGGTGGCATATTATTGCCGTCTGTATGCAATGGAACGAGGACTGAAGATTCCCCAAAAGGATCGAACCAAAACAACGAGCGCTCTGCTGGTTTCCTTGATGAACCAGCTGGAGAAGGACAGGAAGACATTGACATTGGGTCCTGATGATGGTCTTTATGTGGAGGGCTTTGCTTCAAATGTTTTTGCAAAAGCTGACAAACAAGATAGAGCAGGACGACATT

Fln Alignment:

biogeco3_mira_c23528___NDSEPAKILLPYLQRADELQKHEHLVAYYCRLYAMERGLKIPQKDRTKTTSALLVSLMNQLEKDRKTLTLGPDDGLYVEGFASNVFAKADKQDRAGR
A5AW69__________________SENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQGERTKTTNSLLISLMKQLEKDKKALKLGPDDHLHLEGFASNVFARADKQDRAGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain