SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23786

Length: 347 nt

UniGene Fasta

>biog3_v1.0_unigene23786
AATGTATTAATTTCGATCACTGCAGTGATTTGGGGGAATTGCCAGTCAAACTATGCAATTTAACTTCCCTCCAGAGGTTGTCCGTTACTAATTGTCATTTTATCCAAAACTTACCTGATGATATGGGATGGTTAAAGTCACTTCGGGTGCTGAGATTGTCTGCCTGTCCAAGCCTGTCGAGGCTGCCATCTTCCATTTGCAAACTTGCGCAACTAGAATATTTAGATATTTCACATTGCAGAGGTTTGCAGGACCTTCCCACTGAATTTGATCAGCTATCAAAGTTAGAATCGTTGGACATGAGGGAGTGTTCAGTATTCAATAAAGTCCCTACAGTAATACCAAGA

Ace file of the UniGene biog3_v1.0_unigene23786

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene70367	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I8_PINTA	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	leucine rich repeat-like protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat-containing protein 40	IPR015766	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT41

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 115 - 852

Fln protein: CINFDHCSDLGELPVKLCNLTSLQRLSVTNCHFIQNLPDDMGWLKSLRVLRLSACPSLSRLPSSICKLAQLEYLDISHCRGLQDLPTEFDQLSKLESLDMRECSVFNKVPTVIPR

Protein Length: 116

Fln nts: AATGTATTAATTTCGATCACTGCAGTGATTTGGGGGAATTGCCAGTCAAACTATGCAATTTAACTTCCCTCCAGAGGTTGTCCGTTACTAATTGTCATTTTATCCAAAACTTACCTGATGATATGGGATGGTTAAAGTCACTTCGGGTGCTGAGATTGTCTGCCTGTCCAAGCCTGTCGAGGCTGCCATCTTCCATTTGCAAACTTGCGCAACTAGAATATTTAGATATTTCACATTGCAGAGGTTTGCAGGACCTTCCCACTGAATTTGATCAGCTATCAAAGTTAGAATCGTTGGACATGAGGGAGTGTTCAGTATTCAATAAAGTCCCTACAGTAATACCAAGA

Fln Alignment:

biogeco3_mira_c23154___INFDHCSDLGELPVKLCNLTSLQRLSVTNCHFIQNLPDDMGWLKSLRVLRLSACPSLSRLPSSICKLAQLEYLDISHCRGLQDLPTEFDQLSKLESLDMRECSVFNKVPTV
C0PT41__________________INFDHCSDLRELPVKLCNLTSLQKLSVTNCHLIQNLPDDLGWLSSLRVLRLSACPSLSRLPPSICKLGRLEYVDISMSRCLQDLPTEFVQLSNLKTLDMRECSGSKKMPTV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain