SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23733

Length: 236 nt

UniGene Fasta

>biog3_v1.0_unigene23733
GATGGGCACAGATGTTGTGAAGAATGTAAACAAAAATAATGCATCACATGCTGTGCTGTTTGAGGCCCTTGCTTTGGTGATGCATGTTGATGCTGAAAAGGAGATGATGTCCCAGTGTGTTGCTTTGCTTGGGAAGTTTATAGCTGTGCGGGAACCTAACATTCGATATCTTGGGCTGGAAAATATGACTAGAATGTTGATGGTAACAGATGTTCATGAGAGCATTAAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene23733

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4562	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AP-2 complex subunit alpha, putative; K11824 AP-2 complex subunit alpha	-	-	85%
FL-Next	Isoform 3 of AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR	-	-	91%
Blast2go	ap-2 complex subunit alpha-1	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	95%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	95%
Blast2go	protein binding	GO:0005515	Molecular Function	95%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain	IPR003164	-	-
Sma3	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain	IPR013038	-	-
Sma3	Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain	IPR015873	-	-
Sma3	Adaptor protein complex AP-2, alpha subunit	IPR017104	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LPL6-3

Fln msg: Distance to subject end: 573 aas, your sequence is shorter than subject: 78 - 932

Fln protein: MGTDVVKNVNKNNASHAVLFEALALVMHVDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVHESIKRH

Protein Length: 79

Fln nts: GATGGGCACAGATGTTGTGAAGAATGTAAACAAAAATAATGCATCACATGCTGTGCTGTTTGAGGCCCTTGCTTTGGTGATGCATGTTGATGCTGAAAAGGAGATGATGTCCCAGTGTGTTGCTTTGCTTGGGAAGTTTATAGCTGTGCGGGAACCTAACATTCGATATCTTGGGCTGGAAAATATGACTAGAATGTTGATGGTAACAGATGTTCATGAGAGCATTAAAAGACATT

Fln Alignment:

biogeco3_mira_c23080___MGTDVVKNVNKNNASHAVLFEALALVMHVDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVHESIKRH
Q8LPL6-3________________MGTDVVKNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVALLGKFISVREPNIRYLGLENMTRMLMVTDVQDIIKKH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain