SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23622

Length: 255 nt

UniGene Fasta

>biog3_v1.0_unigene23622
AATGTGAGAAAAATAAGAGATGATAAATATGGATGGAAATATGGTTGTGGAGCCAAGGGTTGTGCCAAGATGTTTCATGCAACAGAATTTGTGCATAAGCACTTGAGGTTGAAGCATCCAGATCTTATTGGGGAGCTAACATCCAAAGTATGCGAGGAAGTCTATTTTCAGAACTACATGAATGATCCAGATGCACCTGGTGTGACATTGACTACTCAACAGTCTTGACAGAGAGACAAGGCACGAAGACGGTAA

Ace file of the UniGene biog3_v1.0_unigene23622

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5830	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO	-	-	54%
FL-Next	sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	serrate rna effector molecule-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	chromatin modification	GO:0016568	Biological Process	67%
Blast2go	primary miRNA processing	GO:0031053	Biological Process	67%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	67%
Blast2go	RNA splicing	GO:0008380	Biological Process	67%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	67%
Blast2go	regulation of meristem development	GO:0048509	Biological Process	67%
Blast2go	shoot development	GO:0048367	Biological Process	67%
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	cytosol	GO:0005829	Cellular Component	67%
Blast2go	nuclear dicing body	GO:0010445	Cellular Component	67%
Blast2go	nucleolus	GO:0005730	Cellular Component	67%
Blast2go	nuclear speck	GO:0016607	Cellular Component	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	67%
Blast2go	regulation of adaxial/abaxial pattern formation	GO:2000011	Biological Process	67%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVD0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 151 aas, your sequence is shorter than subject: 76 - 720

Fln protein: NVRKIRDDKYGWKYGCGAKGCAKMFHATEFVHKHLRLKHPDLIGELTSKVCEEVYFQNYMNDPDAPGVTLTTQQS*

Protein Length: 77

Fln nts: AATGTGAGAAAAATAAGAGATGATAAATATGGATGGAAATATGGTTGTGGAGCCAAGGGTTGTGCCAAGATGTTTCATGCAACAGAATTTGTGCATAAGCACTTGAGGTTGAAGCATCCAGATCTTATTGGGGAGCTAACATCCAAAGTATGCGAGGAAGTCTATTTTCAGAACTACATGAATGATCCAGATGCACCTGGTGTGACATTGACTACTCAACAGTCTTGACAGAGAGACAAGGCACGAAGACGGTAA

Fln Alignment:

biogeco3_mira_c22921___NVRKIRDDKYGWKYGCGAKGCAKMFHATEFVHKHLRLKHPDLIGELTSKVCEEVYFQNYMNDPDAPGVTLTTQQS*QRDKARRR
Q9ZVD0__________________HVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYMNDPNAPGGQPATQQSGPRDRPIRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain