SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23613

Length: 341 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23613
GAGATGAGCATGGAGGATGAAGATCACATGCAAATATGTGAGGATGAAGGTTTCTTAATGTGATGGAGGACCAGTTCCAATTGCTATGAATAACCTGCTTCATTCTACTCCATGTGGGTTTGCTGTAACAGATGCCCTTGAACCGGATCAGCCGATTATTTATGTAAACGCGGTGTTTGAGTATGTTACTGGTTACAAGGCCGAGGAGATTCTCGGAAGGAATTGCCGGTTTCTACAGTACAGAGGCCCATTTGCACAGAGAAGGCATCCCCTGGTAGACTCCATGGTGGTTCAAGAAATCAGAAGGTGTCTACATGAAGGTGTTGAATTTCAAGGTGAGC

Ace file of the UniGene biog3_v1.0_unigene23613 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1301	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ZEITLUPE n=1 Tax=Mesembryanthemum crystallinum RepID=Q6UEI5_MESCR	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	adagio protein 1	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	88%
Blast2go	response to red light	GO:0010114	Biological Process	88%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	88%
Blast2go	flower development	GO:0009908	Biological Process	88%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	88%
Blast2go	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031146	Biological Process	88%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	scavenger receptor activity	GO:0005044	Molecular Function	88%
Blast2go	blue light photoreceptor activity	GO:0009882	Molecular Function	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	PAS	IPR000014	-	-
Sma3	PAS fold	IPR013767	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM24

Fln msg: Distance to subject end: 156 aas, atg_distance in limit (1-15): atg_distance = 6, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 272

Fln protein: MNNLLHSTPCGFAVTDALEPDQPIIYVNAVFEYVTGYKAEEILGRNCRFLQYRGPFAQRRHPLVDSMVVQEIRRCLHEGVEFQGE

Protein Length: 86

Fln nts: GAGATGAGCATGGAGGATGAAGATCACATGCAAATATGTGAGGATGAAGGTTTCTTAATGTGATGGAGGACCAGTTCCAATTGCT_-_ATGAATAACCTGCTTCATTCTACTCCATGTGGGTTTGCTGTAACAGATGCCCTTGAACCGGATCAGCCGATTATTTATGTAAACGCGGTGTTTGAGTATGTTACTGGTTACAAGGCCGAGGAGATTCTCGGAAGGAATTGCCGGTTTCTACAGTACAGAGGCCCATTTGCACAGAGAAGGCATCCCCTGGTAGACTCCATGGTGGTTCAAGAAATCAGAAGGTGTCTACATGAAGGTGTTGAATTTCAAGGTGAGC

Fln Alignment:

biogeco3_mira_c22904___FAVTDALEPDQPIIYVNAVFEYVTGYKAEEILGRNCRFLQYRGPFAQRRHPLVDSMVVQEIRRC
B8LM24__________________FVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNVRFLQ--GPDTDRRTVLTIREAIREEKSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain