SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23598

Length: 266 nt

UniGene Fasta

>biog3_v1.0_unigene23598
AATGTATTGATAGAATTATTGGTGGTTTGGAGAAGAAAAATAAGGTAATTAGTAAGGAGGAAAGGAGGACTGTAGCATATCATGAATCAGGTCATGCTGTAGTTGGATGGTTCTTGGAGCATGCAGAGCCACTTTTGAAAGTAACAATTGTTCCTCGCGGCACTGCAGCATTGGGCTTTGCTCAATATTTACCAAATGAGAATTTGCTGATGACAAGGGAGCAGCTATTTGACATGACATGCATGACACTTGGAGGTCGGGCTGCT

Ace file of the UniGene biog3_v1.0_unigene23598

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3641	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial respiratory chain complexes assembly protein AFG3, putative n=1 Tax=Ricinus communis RepID=B9SYC0_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	89%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	89%
Blast2go	proteolysis	GO:0006508	Biological Process	89%
Blast2go	protein catabolic process	GO:0030163	Biological Process	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	89%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 88 - 695

Fln protein: CIDRIIGGLEKKNKVISKEERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYLPNENLLMTREQLFDMTCMTLGGRAA

Protein Length: 89

Fln nts: AATGTATTGATAGAATTATTGGTGGTTTGGAGAAGAAAAATAAGGTAATTAGTAAGGAGGAAAGGAGGACTGTAGCATATCATGAATCAGGTCATGCTGTAGTTGGATGGTTCTTGGAGCATGCAGAGCCACTTTTGAAAGTAACAATTGTTCCTCGCGGCACTGCAGCATTGGGCTTTGCTCAATATTTACCAAATGAGAATTTGCTGATGACAAGGGAGCAGCTATTTGACATGACATGCATGACACTTGGAGGTCGGGCTGCT

Fln Alignment:

biogeco3_mira_c22882___IDRIIGGLEKKNKVISKEERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYLPNEN-LLMTREQLFDMTCMTLGGRAA
C0PQ75__________________IDRIVAGMEGTIMTDGKN-KSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQAR-GLTWFIPGDDPTLISRQQLFARIVGGLGGRAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain