SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23444

Length: 322 nt

UniGene Fasta

>biog3_v1.0_unigene23444
AATGTGTTATTTGTTTAGCCATTTTGCTGCACGTTTATGCCAGATGGTTTTGGAGGCGGTCTGGTCGATTCCCCAGCCGGAATCGACGGAGATCATCTTCTATCCGTAGTCGGTTTAATTTTATAGAAGAAGAACCGGCGTGGCTGCGGAACGTGGGGTTGCAATCTGCCGTATTAGAGACACTGCCCATCTTTGTGTATAAATCAGAGGATTTCACTGATGGGCTGGAGTGCGCAGTGTGTCTGTGCGAATTCGAGGAGAATGAGAAAGCTCGGCTTCTGCCCAATTGCAGGCACAATTTTCATGTCGAGTGTATTGACAT

Ace file of the UniGene biog3_v1.0_unigene23444

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9050	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO	-	-	4.0e-32	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	ring zinc finger	-	-	0.0	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	0.0	57%
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P249

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 106 - 292

Fln protein: CVICLAILLHVYARWFWRRSGRFPSRNRRRSSSIRSRFNFIEEEPAWLRNVGLQSAVLETLPIFVYKSEDFTDGLECAVCLCEFEENEKARLLPNCRHNFHVECID

Protein Length: 107

Fln nts: AATGTGTTATTTGTTTAGCCATTTTGCTGCACGTTTATGCCAGATGGTTTTGGAGGCGGTCTGGTCGATTCCCCAGCCGGAATCGACGGAGATCATCTTCTATCCGTAGTCGGTTTAATTTTATAGAAGAAGAACCGGCGTGGCTGCGGAACGTGGGGTTGCAATCTGCCGTATTAGAGACACTGCCCATCTTTGTGTATAAATCAGAGGATTTCACTGATGGGCTGGAGTGCGCAGTGTGTCTGTGCGAATTCGAGGAGAATGAGAAAGCTCGGCTTCTGCCCAATTGCAGGCACAATTTTCATGTCGAGTGTATTGACAT

Fln Alignment:

biogeco3_mira_c22651___VICLAILLHVYARWFWXXXXXXXXXXXXXXXXXXXXFNFIEEEPAWLRNVGLQSAVLETLPIFVYKSEDFTDGLECAVCLCEFEENEKARLLPNCRHNFHVECID
A9P249__________________VAALVFLLHVYARWIWRESSRISRRTRRRSASTRRRFSFTGREPARLLNVGLDSKILETLPMFLYKSQNFTDGLDCAVCLCEFEDNEKARLLPNCGHSFHVECID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain