SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23314

Length: 297 nt

UniGene Fasta

>biog3_v1.0_unigene23314
AATGTGGCCAGGTATATGGGTATAGAATTTCTCTCTGGGCAGAACATCTTGCGGTTATGGAGGATTGCTTCAACATCCAGAAAGTTTAGAATGCGTACGGAGAGTTAGGGATCTCTCTGAAAATTATTGGAAGCAGTTCAGTGCTAATGAAGTCACAGAGATGAAGGGTCACTTCATGCAATACCCAGTAAAGGTAGAAGCGAATGGAAGAGTGAAACCTCTACCTGGATGTGAAACCTTCCCTGATATTGGAGGAAATATCCTTGGGACGCTTGGGACACCCGCCTTTATCACATT

Ace file of the UniGene biog3_v1.0_unigene23314

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1406	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipase D (Fragment) n=2 Tax=Vitis vinifera RepID=D7TW92_VITVI	-	-	69%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	phospholipase d	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase D.	EC:3.1.4.4	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Glycerophospholipid metabolism	00564	83%
Blast2go	Ether lipid metabolism	00565	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	83%
Blast2go	lipid catabolic process	GO:0016042	Biological Process	83%
Blast2go	phosphatidylcholine metabolic process	GO:0046470	Biological Process	83%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	83%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	83%
Blast2go	phospholipase D activity	GO:0004630	Molecular Function	83%
Blast2go	phosphatidylinositol-4,5-bisphosphate binding	GO:0005546	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Overlapping hits, possible frame ERROR between 74 and 62, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 98 - 861

Fln protein: CGQVYGYRISLWAEHLAVMxxxxxxPESLECVRRVRDLSENYWKQFSANEVTEMKGHFMQYPVKVEANGRVKPLPGCETFPDIGGNILGTLGTPAFIT

Protein Length: 99

Fln nts: AATGTGGCCAGGTATATGGGTATAGAATTTCTCTCTGGGCAGAACATCTTGCGGTTATGxxxxxxxxxxxxxxxxxxCCAGAAAGTTTAGAATGCGTACGGAGAGTTAGGGATCTCTCTGAAAATTATTGGAAGCAGTTCAGTGCTAATGAAGTCACAGAGATGAAGGGTCACTTCATGCAATACCCAGTAAAGGTAGAAGCGAATGGAAGAGTGAAACCTCTACCTGGATGTGAAACCTTCCCTGATATTGGAGGAAATATCCTTGGGACGCTTGGGACACCCGCCTTTATCACATT

Fln Alignment:

biogeco3_mira_c22447___GQVYGYRISLWAEHLxxxxxxxxHPESLECVRRVRDLSENYWKQFSANEVTEMKGHFMQYPVKVEANGRVKPLPGCETFPDIGGNILGTLGT
B8LQ49__________________GQVYGYRMSLWAEHLxxxxxxxxNPQSLDCVRRVNELAEKYWQQFTAEEVIKIKGHLLKYPLKVEADGKVVPLPGNESFPDVGGKILGAHGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain