SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23289

Length: 228 nt

UniGene Fasta

>biog3_v1.0_unigene23289
AAATAAGCAAGGTAGATTTCTGTGCCTTCATCGAGCGCTTTCAGCTTCTTCCACCTCCACAGCCGGTGCCTCCTATCGCTCGTCATGTACTCACCGACCTCACATTCGCAGTCGGAGATATGTTTGACGTGGAAGGACATGTCACCGGCTTCGGCAATCCTGATTGGTTGAGTACGCACGAACCGGCTTCCCGAACGGCCGCGGCCGTCTCGCTTGTCGTGTCACAGG

Ace file of the UniGene biog3_v1.0_unigene23289

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1131	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01425, Amidase, Amidase	-	-	2.8026e-45	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	amidase family protein	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidase.	EC:3.5.1.4	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	74%
Blast2go	Phenylalanine metabolism	00360	74%
Blast2go	Tryptophan metabolism	00380	74%
Blast2go	Cyanoamino acid metabolism	00460	74%
Blast2go	Aminobenzoate degradation	00627	74%
Blast2go	Styrene degradation	00643	74%
Blast2go	Biosynthesis of plant hormones	01070	74%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to mitochondrion	GO:0006626	Biological Process	74%
Blast2go	amidase activity	GO:0004040	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	integral to chloroplast outer membrane	GO:0031359	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB6

Fln msg: Distance to subject end: 357 aas, your sequence is shorter than subject: 75 - 458

Fln protein: ISKVDFCAFIERFQLLPPPQPVPPIARHVLTDLTFAVGDMFDVEGHVTGFGNPDWLSTHEPASRTAAAVSLVVSQ

Protein Length: 76

Fln nts: AAATAAGCAAGGTAGATTTCTGTGCCTTCATCGAGCGCTTTCAGCTTCTTCCACCTCCACAGCCGGTGCCTCCTATCGCTCGTCATGTACTCACCGACCTCACATTCGCAGTCGGAGATATGTTTGACGTGGAAGGACATGTCACCGGCTTCGGCAATCCTGATTGGTTGAGTACGCACGAACCGGCTTCCCGAACGGCCGCGGCCGTCTCGCTTGTCGTGTCACAGG

Fln Alignment:

biogeco3_mira_c22405___KVDFCAFIERFXXXXXXXXXXXIARHVLTDLTFAVGDMFDVEGHVTGFGNPDWLSTHEPASRTAAAVSLVV
C0PSB6__________________KEDFGAFTERIQLLPPPQPSPPESPYPLTGLTFAIKEIFDIEGYVTGFGNPDWQQTHEPAAQTAPVVTFVV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain