SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23253

Length: 220 nt

UniGene Fasta

>biog3_v1.0_unigene23253
CAGCCACCAGTGTGTCTTTTTCATTCATTGTTATATAGAGAGGTATGCAGGTTTGTGCGTAATACAGTAGGCCAGGGGCTCTTATCTTGTGAGTTTTCAGATAAGGTATTGTCATGGGTTCAAAAGAATCTGCTAGGAAGCCATTGGAATTGGCTGGATTTGTCATTTGTGTATTGTTAGGGCTGTGTGTAAGCAATGGATCGGCTCAACTTAGTGAGAA

Ace file of the UniGene biog3_v1.0_unigene23253

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32748	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative peroxidase n=1 Tax=Solanum tuberosum RepID=Q948Z3_SOLTU	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	peroxidase 73	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	78%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Uncharacterised protein family UPF0120	IPR005343	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3		IPR017909	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN9

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 35 - 333

Fln protein: MGSKESARKPLELAGFVICVLLGLCVSNGSAQLSE

Protein Length: 36

Fln nts: CAGCCACCAGTGTGTCTTTTTCATTCATTGTTATATAGAGAGGTATGCAGGTTTGTGCGTAATACAGTAGGCCAGGGGCTCTTATCTTGTGAGTTTTCAGATAAGGTATTGTC_-_ATGGGTTCAAAAGAATCTGCTAGGAAGCCATTGGAATTGGCTGGATTTGTCATTTGTGTATTGTTAGGGCTGTGTGTAAGCAATGGATCGGCTCAACTTAGTGAGAA

Fln Alignment:

biogeco3_mira_c22349___MGSKESARKPLELAGFVICVLLGLCVSNGSAQLSE
A9NMN9__________________MGSKKSARKPLELAGFVVWVLLGLCVSKGSAQLKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain