SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23217

Length: 208 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene23217
AAATGGCGAACATTGCAGTTGGATTGCCGAATTTTAGCATGGGACGTGTGTATAAAACTCACCACTTCAAGAGTCCTTCAAAGCGCCTGATTACAGTCCGAGCTAATAAAGTCGAGCCTTCAGACAAATCTATAGAATTAATGCGGAAATTTTCGGAACAATATGCTCGACGTTCAGGAACATATTTTGTGTTGATAAAGGGGACATT

Ace file of the UniGene biog3_v1.0_unigene23217 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7668	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana] sp\|Q9SJ89.1\|FTRC_ARATH RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gb\|AAD22336.1\| putative ferredoxin-thioredoxin redu	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	ferredoxin-thioredoxin reductase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	ferredoxin-NAD(P) reductase activity	GO:0008937	Molecular Function	87%
Blast2go	metal ion binding	GO:0046872	Molecular Function	87%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	87%
Blast2go	ferredoxin:thioredoxin reductase activity	GO:0030385	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ferredoxin thioredoxin reductase beta subunit, domain	IPR004209	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTH1

Fln msg: Distance to subject end: 80 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 68 - 149

Fln protein: MANIAVGLPNFSMGRVYKTHHFKSPSKRLITVRANKVEPSDKSIELMRKFSEQYARRSGTYFVLIKGT

Protein Length: 69

Fln nts: AA_-_ATGGCGAACATTGCAGTTGGATTGCCGAATTTTAGCATGGGACGTGTGTATAAAACTCACCACTTCAAGAGTCCTTCAAAGCGCCTGATTACAGTCCGAGCTAATAAAGTCGAGCCTTCAGACAAATCTATAGAATTAATGCGGAAATTTTCGGAACAATATGCTCGACGTTCAGGAACATATTTTGTGTTGATAAAGGGGACATT

Fln Alignment:

biogeco3_mira_c22290___MANIAVGLPNFSMGRVYKTHHFKSPSKRLITVRANKVEPSDKSIELMRKFSEQYARRSGTYFVLIK
A9NTH1__________________MANIAIGLPNFSMGCVYKSQHFKNPSKRLITVRANKVEPSDKSVEIMRKFSEQYARRSGTYFCVDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain