SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene23197

Length: 260 nt

UniGene Fasta

>biog3_v1.0_unigene23197
ACGCGGGGTGAAGAAGCGTATGTTTCGGCCAGAAAAGAAAACATGGCTTCTATTCGCTGTTGCCTCAGAGGAGTTACTCCCTCTACCACAACAGCTTCATTTATCCGTTCATTCGATGGTAATATCGTAAAACACAGAGCATTCCGACACCCAAATCCATATATTCTCCACAGGTATTTGAGCACCAACAAATTTGTAAAAGGCAGGGAATGCAGAGCCCAAGTGGATGGGCGGGACTACGAAGCAGTCATAGGAATAGA

Ace file of the UniGene biog3_v1.0_unigene23197

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8051	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative n=1 Tax=Ricinus communis RepID=B9SQR9_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	aspartyl-trna glutamyl-trna amidotransferase subunit b	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutaminyl-tRNA synthase (glutamine-hydrolyzing).	EC:6.3.5.7	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	glutamyl-tRNA aminoacylation	GO:0006424	Biological Process	87%
Blast2go	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	GO:0050567	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E	IPR017959	-	-
Sma3	Asn/Gln amidotransferase	IPR018027	-	-
Sma3	Glutamyl-tRNA(Gln) amidotransferase, B subunit	IPR004413	-	-
Sma3		IPR006107	-	-
Sma3	Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic	IPR006075	-	-
Sma3	Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site	IPR017958	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9X5

Fln msg: Distance to subject end: 478 aas, your sequence is shorter than subject: 72 - 511

Fln protein: MASIRCCLRGVTPSTTTASFIRSFDGNIVKHRAFRHPNPYILHRYLSTNKFVKGRECRAQVDGRDYEAVIGI

Protein Length: 73

Fln nts: ACGCGGGGTGAAGAAGCGTATGTTTCGGCCAGAAAAGAAAAC_-_ATGGCTTCTATTCGCTGTTGCCTCAGAGGAGTTACTCCCTCTACCACAACAGCTTCATTTATCCGTTCATTCGATGGTAATATCGTAAAACACAGAGCATTCCGACACCCAAATCCATATATTCTCCACAGGTATTTGAGCACCAACAAATTTGTAAAAGGCAGGGAATGCAGAGCCCAAGTGGATGGGCGGGACTACGAAGCAGTCATAGGAATAGA

Fln Alignment:

biogeco3_mira_c22257___ILHRYLSTNKFVKGRECRAQVDGRDYEAVIGI
D5A9X5__________________MLHRHLSTRKSVKGKECRAQVDGQDYEAVIGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain