SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22718

Length: 269 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22718
CGCAACTTACAAAGCTGAACTGGTCCCAGGATGTTAGTAGCAGTGAAGAGACTTTCCGTGGGACGCTTCCAAGGCATTCAGCAGTTTGATGCAGAGATCAGAACACTTGGACGGGTACGCCATCCAAACCTTGTAACATTAATAGGCTACCATGCCAGCAAGTCACAAATGTTTCTGGTATACAATTATTTGCCTGGAGGTAACTTGGAAAAATTTCTTCAAGAGAGATCAAAACGAAGAGTTGACTGGGGCATGATTCACAAAATTGC

Ace file of the UniGene biog3_v1.0_unigene22718 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35535	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase RPK2 [Arabidopsis thaliana] sp\|Q9S7I6.1\|RPK2_ARATH RecName: Full=LRR receptor-like serine/threonine-protein kinase RPK2; AltName: Full=Protein TOADSTOOL 2; AltName: Full=Receptor-like protein kinase 2; Fla	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	leucine rich repeat receptor protein kinase 2	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	radial axis specification	GO:0009945	Biological Process	93%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	93%
Blast2go	response to water deprivation	GO:0009414	Biological Process	93%
Blast2go	response to cold	GO:0009409	Biological Process	93%
Blast2go	embryonic meristem development	GO:0048508	Biological Process	93%
Blast2go	anther development	GO:0048653	Biological Process	93%
Blast2go	pollen germination	GO:0009846	Biological Process	93%
Blast2go	cell part	GO:0044464	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 234 aas, your sequence is shorter than subject: 89 - 465

Fln protein: RNLQS*TGPRMLVAVKRLSVGRFQGIQQFDAEIRTLGRVRHPNLVTLIGYHASKSQMFLVYNYLPGGNLEKFLQERSKRRVDWGMIHKI

Protein Length: 90

Fln nts: CGCAACTTACAAAGCTGAACTGGTCCCAGGATGTTAGTAGCAGTGAAGAGACTTTCCGTGGGACGCTTCCAAGGCATTCAGCAGTTTGATGCAGAGATCAGAACACTTGGACGGGTACGCCATCCAAACCTTGTAACATTAATAGGCTACCATGCCAGCAAGTCACAAATGTTTCTGGTATACAATTATTTGCCTGGAGGTAACTTGGAAAAATTTCTTCAAGAGAGATCAAAACGAAGAGTTGACTGGGGCATGATTCACAAAATTGC

Fln Alignment:

biogeco3_mira_c21548___GPRMLVAVKRLSVGRFQGIQQFDAEIRTLGRVRHPNLVTLIGYHASKSQMFLVYNYLPGGNLEKFLQERSKRRVDWGMIHKI
A9NUW8__________________GTGLTVAVKALNHDGLQGHKEWVAEVNFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain