SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22625

Length: 194 nt

UniGene Fasta

>biog3_v1.0_unigene22625
AATGTGCCTTTCAGATGAAGATAAAGCAAATTGCAGTAGTCTTGATTTGAACCGTGCACCCTTTCTCCTAAAACATGTTCTTGGGAAATGGAGTTCAACACTGTTTGGCATTGCTCTGCTAGCTTCTGGTCAAAGTTCGACAATAACAGGGACCTATGCTGGACAGTATGTGATGCAGGGATTTTTACATTTAC

Ace file of the UniGene biog3_v1.0_unigene22625

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3682	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Metal transporter Nramp1 n=9 Tax=Brassicaceae RepID=NRAM1_ARATH	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	metal ion transporter	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	manganese ion homeostasis	GO:0055071	Biological Process	76%
Blast2go	cadmium ion transmembrane transport	GO:0070574	Biological Process	76%
Blast2go	lead ion transport	GO:0015692	Biological Process	76%
Blast2go	iron ion transmembrane transport	GO:0034755	Biological Process	76%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	76%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	iron ion binding	GO:0005506	Molecular Function	76%
Blast2go	iron ion transmembrane transporter activity	GO:0005381	Molecular Function	76%
Blast2go	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	76%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	76%
Blast2go	inorganic anion transmembrane transporter activity	GO:0015103	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH7

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 64 - 518

Fln protein: MCLSDEDKANCSSLDLNRAPFLLKHVLGKWSSTLFGIALLASGQSSTITGTYAGQYVMQGFLHL

Protein Length: 65

Fln nts: AATGTGCCTTTCAGATGAAGATAAAGCAAATTGCAGTAGTCTTGATTTGAACCGTGCACCCTTTCTCCTAAAACATGTTCTTGGGAAATGGAGTTCAACACTGTTTGGCATTGCTCTGCTAGCTTCTGGTCAAAGTTCGACAATAACAGGGACCTATGCTGGACAGTATGTGATGCAGGGATTTTTACATTTAC

Fln Alignment:

biogeco3_mira_c21421___LFGIALLASGQSSTITGTYAGQYVMQGFLHL
B8LLH7__________________IWAIGLLAAGQSSTITGTYAGQFIMAGFLNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain