SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22477

Length: 265 nt

UniGene Fasta

>biog3_v1.0_unigene22477
GGAGTTGAAGTTCGGACCTGGTGATGGACATCTTCACTACTATCTTTACAACTATCGCATTAGGGAGCCCCTGAAACCATCTGAATTGGGGTTGGTACTGTTATAGTACTGGGTTCATGCAGAATGTATAATCTTCTAAAGCTTTGTTGCTATTGCAGACAGTTAAATAACTTTGTTGGTATTTAAAAAACTATCTGGTTTTCATATGCACATGCAGTTGTCAACTGGAATTTCACATTTTATGGTAATCTGAATGTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene22477

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3559	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Ricinus communis RepID=B9RK90_RICCO	-	-	74%
FL-Next	sp=Glycylpeptide N-tetradecanoyltransferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Blast2go	glycylpeptide n-tetradecanoyltransferase 1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoethanolamine N-methyltransferase.	EC:2.1.1.103	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	84%
Blast2go	Glycylpeptide N-tetradecanoyltransferase.	EC:2.3.1.97	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine biosynthetic process	GO:0006656	Biological Process	84%
Blast2go	choline biosynthetic process	GO:0042425	Biological Process	84%
Blast2go	embryonic shoot morphogenesis	GO:0010064	Biological Process	84%
Blast2go	methylation	GO:0032259	Biological Process	84%
Blast2go	N-terminal protein myristoylation	GO:0006499	Biological Process	84%
Blast2go	pollen tube growth	GO:0009860	Biological Process	84%
Blast2go	pollen development	GO:0009555	Biological Process	84%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	84%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	84%
Blast2go	phosphoethanolamine N-methyltransferase activity	GO:0000234	Molecular Function	84%
Blast2go	glycylpeptide N-tetradecanoyltransferase activity	GO:0004379	Molecular Function	84%
Blast2go	cytosol	GO:0005829	Cellular Component	84%
Blast2go	ribosome	GO:0005840	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	Myristoyl-CoA:protein N-myristoyltransferase	IPR000903	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LTR9

Fln msg: your sequence is shorter than subject: 35 - 434

Fln protein: ELKFGPGDGHLHYYLYNYRIREPLKPSELGLVLL*

Protein Length: 36

Fln nts: GGAGTTGAAGTTCGGACCTGGTGATGGACATCTTCACTACTATCTTTACAACTATCGCATTAGGGAGCCCCTGAAACCATCTGAATTGGGGTTGGTACTGTTATAG___TACTGGGTTCATGCAGAATGTATAATCTTCTAAAGCTTTGTTGCTATTGCAGACAGTTAAATAACTTTGTTGGTATTTAAAAAACTATCTGGTTTTCATATGCACATGCAGTTGTCAACTGGAATTTCACATTTTATGGTAATCTGAATGTTTGACATT

Fln Alignment:

biogeco3_mira_c21206___ELKFGPGDGHLHYYLYNYRIREPLKPSELGLVLL
Q9LTR9__________________ELKFGPGDGQLHYYLYNYRLKSALKPAELGLVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain