SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22297

Length: 203 nt

UniGene Fasta

>biog3_v1.0_unigene22297
AATGTCTCTTCCTGCGTTGCAGAATGTTACTTTAATCAACAATGCATTGCAAGGGCCTTATCCCAATTTTGACAAGCAAATAAATGCAGTCATTGGGGAAAACAGTTTCTGTTTGCCCAACCCGGGTCCCTGTGATAAGAAGGTGGATGTGTTGCTTTCCTTTGCTCAGGATGTTGGGTATCCCTACATTTTGGCCTCTGACT

Ace file of the UniGene biog3_v1.0_unigene22297

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10145	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-18	26%
FL-Next	sp=Probable receptor protein kinase TMK1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P43298

Fln msg: Distance to subject end: 598 aas, your sequence is shorter than subject: 67 - 942

Fln protein: MSLPALQNVTLINNALQGPYPNFDKQINAVIGENSFCLPNPGPCDKKVDVLLSFAQDVGYPYILASD

Protein Length: 68

Fln nts: AATGTCTCTTCCTGCGTTGCAGAATGTTACTTTAATCAACAATGCATTGCAAGGGCCTTATCCCAATTTTGACAAGCAAATAAATGCAGTCATTGGGGAAAACAGTTTCTGTTTGCCCAACCCGGGTCCCTGTGATAAGAAGGTGGATGTGTTGCTTTCCTTTGCTCAGGATGTTGGGTATCCCTACATTTTGGCCTCTGACT

Fln Alignment:

biogeco3_mira_c20922___MSLPALQNVTLINNALQGPYPNFDKQINAVIGE--NSFCLPNPGPCDKKVDVLLSFAQDVGYPYILA
P43298__________________LSLESLKVVNLTNNHLQGPVPVFKSSVSVDLDKDSNSFCLSSPGECDPRVKSLLLIASSFDYPPRLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain