SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22269

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22269
CGATTCTGTGGAGGCAGTAAAGAAGAGAGAAAATGTTGTGACAAATTTTATTCCAGTCCTTCGTTCTGGAGGCTGGGCTGATATAGGTGATCGTGATTGTATGGAAGATACACATGTGTGCATTGACAGACTTGCAGACAAGTTTGGATTTTCTCCCCTTGGAGAAGGTCCCGGAGCCTTCTATGGGGTGTTTGATGGACATGGAGGAAAACATGCTGCACAGTTTGCTTGTGACAAATTGCCTAGTCTTATTGTCAAAGATGCTGATTTTCCTTTGCATATTGAGACATT

Ace file of the UniGene biog3_v1.0_unigene22269 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9404	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C [Mesembryanthemum crystallinum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein phosphatase 2c	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	regulation of defense response to virus	GO:0050688	Biological Process	76%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	76%
Blast2go	metal ion binding	GO:0046872	Molecular Function	76%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	76%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA0

Fln msg: Distance to subject end: 226 aas, your sequence is shorter than subject: 96 - 397

Fln protein: DSVEAVKKRENVVTNFIPVLRSGGWADIGDRDCMEDTHVCIDRLADKFGFSPLGEGPGAFYGVFDGHGGKHAAQFACDKLPSLIVKDADFPLHIET

Protein Length: 97

Fln nts: CGATTCTGTGGAGGCAGTAAAGAAGAGAGAAAATGTTGTGACAAATTTTATTCCAGTCCTTCGTTCTGGAGGCTGGGCTGATATAGGTGATCGTGATTGTATGGAAGATACACATGTGTGCATTGACAGACTTGCAGACAAGTTTGGATTTTCTCCCCTTGGAGAAGGTCCCGGAGCCTTCTATGGGGTGTTTGATGGACATGGAGGAAAACATGCTGCACAGTTTGCTTGTGACAAATTGCCTAGTCTTATTGTCAAAGATGCTGATTTTCCTTTGCATATTGAGACATT

Fln Alignment:

biogeco3_mira_c20881___DSVEAVKKRENVVTNFIPVLRSGGWADIGDRDCMEDTHVCIDRLADKFGFSPLGEGPGAFYGVFDGHGGKHAAQFACDKLPSLIVKDADFPLHIE
B8LQA0__________________ESVEAVKKRENVATNFIPVLRSGGWADIGDRDCMEDTHICIDSFVDKFGFPPIEEGPGAFYGVFDGHGGKHAAQFACDRLPSLIVKDADFPLQIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain