SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22147

Length: 398 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22147
GAGAATTGCCTGCAAGTGGTTTATATGGAAATGCAGGGCTTTGTACTTCAGGGACTGATAATTGTTTTGAACAATTAGGGGATGAGTCCCCTGAAAGACATTCTAGGGTTTTTAATGTTCAGATAATCATAGGCATTTTGTTTAGTGCTATAGGAATGATGCTGTTTCTGGGGAATGTGTGTTGATTAAAGCCAAGAAAATGCCTCAGCAAGAGTTTGAAGATTCAGAAATCGGGTGGCCATGGCGGATGACCCTGTTCCAGAAACTCAATTTCTCTGTAGAAGATGTTGTTGATTGTCTGGTTGACAGCAATATCATAGGAAAAGACAGTTCAGGTGCTGTTTACAGGTCTGAAATGCCTAACAGAGATGTCATAGCAGTGAAGAAGCTTTGGACTT

Ace file of the UniGene biog3_v1.0_unigene22147 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41700	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase RCH1 n=2 Tax=Arabidopsis RepID=RCH1_ARATH	-	-	6.0e-38	47%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	36%
Blast2go	lrr receptor-like serine threonine-protein kinase rch1-like	-	-	6.44597e-43	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	6.44597e-43	59%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 245 and 245, Distance to subject end: 316 aas, your sequence is shorter than subject: 132 - 1145

Fln protein: ELPASGLYGNAGLCTSGTDNCFEQLGDESPERHSRVFNVQIIIGILFSAIGMMLFLGNVC*LKPRKCLSKSLKIQKSGGHxxMTLFQKLNFSVEDVVDCLVDSNIIGKDSSGAVYRSEMPNRDVIAVKKLWT

Protein Length: 133

Fln nts: GAGAATTGCCTGCAAGTGGTTTATATGGAAATGCAGGGCTTTGTACTTCAGGGACTGATAATTGTTTTGAACAATTAGGGGATGAGTCCCCTGAAAGACATTCTAGGGTTTTTAATGTTCAGATAATCATAGGCATTTTGTTTAGTGCTATAGGAATGATGCTGTTTCTGGGGAATGTGTGTTGATTAAAGCCAAGAAAATGCCTCAGCAAGAGTTTGAAGATTCAGAAATCGGGTGGCCATxxxxxxATGACCCTGTTCCAGAAACTCAATTTCTCTGTAGAAGATGTTGTTGATTGTCTGGTTGACAGCAATATCATAGGAAAAGACAGTTCAGGTGCTGTTTACAGGTCTGAAATGCCTAACAGAGATGTCATAGCAGTGAAGAAGCTTTGGACTT

Fln Alignment:

biogeco3_mira_c20711___SGLYGNAGLCTSGTDNCFEQLGDESPERHSRVFNVQIIIGILFSAIGMMLFLGNVC*LKPRKCLSKSLKIQKSGGHGRMTLFQKLNFSVEDVVDCLVDSNIIGKDSSGAVYRSEMPNRDVIAVKKLWT
Q9FEU2__________________SDLSGNAALCTS-EEVCFMSSGAHFEQR---VFEVKLVMILLFSVTAVMMILGIWLVTQSGEWVTGKWRIPRSGGHGRLTTFQKLNFSADDVVNALVDSNIIGKGCSGVVYKAEMGNGDVIAVKKLWT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain