SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22145

Length: 326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22145
CTGAAATCAATCAAGGCAGATTTGGTGATCTCAGATGTTGTACCTGTGGCATGTCGAGCGGCAGCAGATGCTGGTATCCCATCTGTCTGTGTGACCAATTTCAGTTGGGATTTTATATATGCAGAATATGTTATGGAAGCTGGTTATCATCACCGTTCCACAGTTTGGCAGATAGCTGAAGACTATTCTCATTGCCTTTTCTTGCTCAGACTTCCTGGCTATTGTCCTATGCCAGCTTTTCGTGATGTTATTGATGTGCCCCTCGTTGTTAGGAAAGCACGAAGAAGTCGTGAAGACATGCGTAAAGAACTTGGGGTTAGTACATT

Ace file of the UniGene biog3_v1.0_unigene22145 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6299	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	arabinose kinase [Arabidopsis thaliana] sp\|O23461.1\|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb\|CAB10392.1\| galactokinase like protein [Arabidopsis thaliana] emb\|CAB78655.1\| galactokinase like protein [Arabidopsis thaliana] gb\|AEE83696.1\| a	-	-	67%
FL-Next	sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	84%
Blast2go	galactokinase like protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-arabinokinase.	EC:2.7.1.46	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Galactokinase.	EC:2.7.1.6	-	83%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	83%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	arabinose metabolic process	GO:0019566	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	RNA processing	GO:0006396	Biological Process	83%
Blast2go	L-arabinokinase activity	GO:0009702	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	galactokinase activity	GO:0004335	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	GHMP kinase, ATP-binding, conserved site	IPR006203	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3		IPR012366	-	-
Sma3	Galactokinase, glycosyltransferase	IPR012369	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23461

Fln msg: Distance to subject end: 767 aas, your sequence is shorter than subject: 108 - 1039

Fln protein: LKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREDMRKELGVST

Protein Length: 109

Fln nts: CTGAAATCAATCAAGGCAGATTTGGTGATCTCAGATGTTGTACCTGTGGCATGTCGAGCGGCAGCAGATGCTGGTATCCCATCTGTCTGTGTGACCAATTTCAGTTGGGATTTTATATATGCAGAATATGTTATGGAAGCTGGTTATCATCACCGTTCCACAGTTTGGCAGATAGCTGAAGACTATTCTCATTGCCTTTTCTTGCTCAGACTTCCTGGCTATTGTCCTATGCCAGCTTTTCGTGATGTTATTGATGTGCCCCTCGTTGTTAGGAAAGCACGAAGAAGTCGTGAAGACATGCGTAAAGAACTTGGGGTTAGTACATT

Fln Alignment:

biogeco3_mira_c20707___LKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREDMRKELGVS
O23461__________________LHSIKADFVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain