SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene22096

Length: 427 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene22096
CCTCCCAGACTCAGTCCGGAACTTAACGAGACTCAAATGGCTTGACTTGTCTGGGTGTTCCAATTTACAGATGCTGCCCAATTTTCGGCATTTGAACTCGTTGGAGGAGCTTCACTTGTCTGGATGTTCCAATTTACAGATGCCGCCCAATGTTCAGCATTTGAGCTCGCTGGTGAAGCTTTATGTGTCTCACTGTTCAAAACTGCAATGGGGTGCTGGAGTAGTCGAGTCCCTGCGCCATCAACTGGGAAATGGTTTCATCGAAGAAGGCGGCGAAAACATTAATGAATAAAGCTGCAGCGAGTTGTATAATATAAGAGAACTTCTTTAAGATCAGATGGCCACGGTCCTCGCCACACCCCGCAAAGAGCGCCGTGTCATTAATCACAGGCAAATGAATTACAGCATGGACAGAATGCTCTACATT

Ace file of the UniGene biog3_v1.0_unigene22096 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene61350	2/3
SustainPine v2.0	sp_v2.0_unigene79408	1/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	hypothetical protein 2_10052_01 [Pinus radiata]	-	-	2.41842e-16	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 30 aas, your sequence is shorter than subject: 97 - 1071

Fln protein: LPDSVRNLTRLKWLDLSGCSNLQMLPNFRHLNSLEELHLSGCSNLQMPPNVQHLSSLVKLYVSHCSKLQWGAGVVESLRHQLGNGFIEEGGENINE*

Protein Length: 98

Fln nts: CCTCCCAGACTCAGTCCGGAACTTAACGAGACTCAAATGGCTTGACTTGTCTGGGTGTTCCAATTTACAGATGCTGCCCAATTTTCGGCATTTGAACTCGTTGGAGGAGCTTCACTTGTCTGGATGTTCCAATTTACAGATGCCGCCCAATGTTCAGCATTTGAGCTCGCTGGTGAAGCTTTATGTGTCTCACTGTTCAAAACTGCAATGGGGTGCTGGAGTAGTCGAGTCCCTGCGCCATCAACTGGGAAATGGTTTCATCGAAGAAGGCGGCGAAAACATTAATGAATAA___AGCTGCAGCGAGTTGTATAATATAAGAGAACTTCTTTAAGATCAGATGGCCACGGTCCTCGCCACACCCCGCAAAGAGCGCCGTGTCATTAATCACAGGCAAATGAATTACAGCATGGACAGAATGCTCTACATT

Fln Alignment:

biogeco3_mira_c20637___LPDSVRNLTRLKWLDLSGCSNLQMLP-NFRHLNSLEELHLSGCSNLQ-MPPNVQHLSSLVKLYVSHCSKLQWGAGVVESLR
C0PQE2__________________LPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
109	33			66	0.997467
110	33	66			0.997464
112		66	33		0.997464
218		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain