SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21962

Length: 266 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21962
ACAGGTAGGAGGCCGGTTGAAAGCTCTGAGTCTGAGGTGGTTATTCTGTGTGAGTATGTGAGATCTTCTCTTGAACGGGGGGAAGGAGCAGCGTGTATTGATCCCAATTTACATCAACGACCTGAAAATGAGGTCATGCAGGTATTGAAACTTGGGCTTATTTGCACCGCTCAGACACCATCAAGAAGACCTAGTATGGCAGAGGTTGTTCAGGTTCTGGAGTCAATCAAACCCAATTCAGATTTGTGATATGAACATATAACATT

Ace file of the UniGene biog3_v1.0_unigene21962 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene965	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat transmembrane protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RBW0_RICCO	-	-	60%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	35%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g12460-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	75%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	75%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	75%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 83 - 998

Fln protein: TGRRPVESSESEVVILCEYVRSSLERGEGAACIDPNLHQRPENEVMQVLKLGLICTAQTPSRRPSMAEVVQVLESIKPNSDL*

Protein Length: 84

Fln nts: ACAGGTAGGAGGCCGGTTGAAAGCTCTGAGTCTGAGGTGGTTATTCTGTGTGAGTATGTGAGATCTTCTCTTGAACGGGGGGAAGGAGCAGCGTGTATTGATCCCAATTTACATCAACGACCTGAAAATGAGGTCATGCAGGTATTGAAACTTGGGCTTATTTGCACCGCTCAGACACCATCAAGAAGACCTAGTATGGCAGAGGTTGTTCAGGTTCTGGAGTCAATCAAACCCAATTCAGATTTGTGA___TATGAACATATAACATT

Fln Alignment:

biogeco3_mira_c20429___TGRRPVESSESEVVILCEYVRSSLERGEGA-ACIDPNLHQRPENEVMQVLKLGLICTAQTPSRRPSMAEVVQVLESIKPN
Q19AV8__________________TGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain