SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21952

Length: 333 nt

UniGene Fasta

>biog3_v1.0_unigene21952
AATGTTGATGCTTGGTTATCGCTGGGGTTGATGTTTCACTTGAGTGTGCTCCCATTGACACGCCAACTTACTAATATCAGTGGAATTCTGTGGAGTAAAACACTGCAGGGGGCTAGGGCCCAAAGAGTTGAGTATCTTCTATTGCATGAGTTCCATGGAAGAAAGTATATTTTACCAGACAAGATGTCAGCTCGAGAGAAAGAACTTAAAGCATCAAAAAGAAAATTTATTTCAGAAAGTGGGGTTGAGGATGCTGAGGAACAAGTTCTTGACGGTATTGTTGAGGATCAGGCTGGGCTACACACATATGGCAAGCATAAGAAAGGTCCAGCT

Ace file of the UniGene biog3_v1.0_unigene21952

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30366	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=2 Tax=Andropogoneae RepID=C5XR76_SORBI	-	-	69%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	dna polymerase alpha catalytic	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	79%
Blast2go	Pyrimidine metabolism	00240	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	79%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	79%
Blast2go	lagging strand elongation	GO:0006273	Biological Process	79%
Blast2go	binding	GO:0005488	Molecular Function	79%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	79%
Blast2go	DNA primase activity	GO:0003896	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	Zinc finger, DNA-directed DNA polymerase, family B, alpha	IPR015088	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FHA3

Fln msg: Distance to subject end: 596 aas, your sequence is shorter than subject: 111 - 1492

Fln protein: NVDAWLSLGLMFHLSVLPLTRQLTNISGILWSKTLQGARAQRVEYLLLHEFHGRKYILPDKMSAREKELKASKRKFISESGVEDAEEQVLDGIVEDQAGLHTYGKHKKGPA

Protein Length: 112

Fln nts: AATGTTGATGCTTGGTTATCGCTGGGGTTGATGTTTCACTTGAGTGTGCTCCCATTGACACGCCAACTTACTAATATCAGTGGAATTCTGTGGAGTAAAACACTGCAGGGGGCTAGGGCCCAAAGAGTTGAGTATCTTCTATTGCATGAGTTCCATGGAAGAAAGTATATTTTACCAGACAAGATGTCAGCTCGAGAGAAAGAACTTAAAGCATCAAAAAGAAAATTTATTTCAGAAAGTGGGGTTGAGGATGCTGAGGAACAAGTTCTTGACGGTATTGTTGAGGATCAGGCTGGGCTACACACATATGGCAAGCATAAGAAAGGTCCAGCT

Fln Alignment:

biogeco3_mira_c20417___DAWLSLGLMFHLSVLPLTRQLTNISGILWSKTLQGARAQRVEYLLLHEFHGRKYILPDKMSAREKELKASKRKFISESGVEDAEEQVLDGIVEDQAGLHTYGKHKKGPA
Q9FHA3__________________DAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDKISQRMKEIKSSKRRM--DYAPEDRNVDELDADLTLENDPSKGSKTKKGPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain