SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21934

Length: 390 nt

UniGene Fasta

>biog3_v1.0_unigene21934
AATGTATTAATCATGGTAACTGCAATCAGCATGGAAAGTATTTTGGTAGGCAAAGATCTTCGTGGATGTGCATTTGTCTATGGTTCACTGAGTTTCATAGAGAAAATTTCGTGTGGGATTGTGCTTTACATCATTGAAGATTTTCATACCTCTGGGAACGGATGTAATGCGTCTCACAAATTGGGATTGTGCCATTCATTAACTCAAATGTCTCTTGCTTTTGTCCCCGGAGGATGTGCTCTTTTAGGCATAATCGTGACATTCACGATGGATTTGGATGCAGTGCCGGACTTAGATGCAGTGACTGTGCAGTCATTACATGAGCCGTTACTTTCCTAAATGAATCTTGAAGCACTTATCTTTAATCAAGGCACTCTGAGGGTCGACATT

Ace file of the UniGene biog3_v1.0_unigene21934

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2013	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Os07g0578200 protein n=3 Tax=Oryza sativa RepID=Q0D566_ORYSJ	-	-	53%
FL-Next	tr=Sugar transport protein-like; Oryza sativa subsp. japonica (Rice).	-	-	50%
Blast2go	major facilitator protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q6ZL90

Fln msg: your sequence is shorter than subject: 113 - 450

Fln protein: NVLIMVTAISMESILVGKDLRGCAFVYGSLSFIEKISCGIVLYIIEDFHTSGNGCNASHKLGLCHSLTQMSLAFVPGGCALLGIIVTFTMDLDAVPDLDAVTVQSLHEPLLS*

Protein Length: 114

Fln nts: AATGTATTAATCATGGTAACTGCAATCAGCATGGAAAGTATTTTGGTAGGCAAAGATCTTCGTGGATGTGCATTTGTCTATGGTTCACTGAGTTTCATAGAGAAAATTTCGTGTGGGATTGTGCTTTACATCATTGAAGATTTTCATACCTCTGGGAACGGATGTAATGCGTCTCACAAATTGGGATTGTGCCATTCATTAACTCAAATGTCTCTTGCTTTTGTCCCCGGAGGATGTGCTCTTTTAGGCATAATCGTGACATTCACGATGGATTTGGATGCAGTGCCGGACTTAGATGCAGTGACTGTGCAGTCATTACATGAGCCGTTACTTTCCTAA___ATGAATCTTGAAGCACTTATCTTTAATCAAGGCACTCTGAGGGTCGACATT

Fln Alignment:

biogeco3_mira_c20396___NVLIMVTAISMESILVGKDLRGCAFVYGSLSFIEKISCGIVLYIIEDFHTSGNGCNASHKLGLCHSLTQMSLAFVPGGCALLGIIVTFTMDLDAVPDLDAVTVQSLHEPLLS
Q6ZL90__________________NALMTVTSISMEGILVGEDLNGCAFVYGSLSFVDKVSCGLALYILESYQGSTN-TRQNLELAFGYSVTRLGLGLVPAACSLLSAIIAYTMDL---PD---TRRRPLVEPLLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain