SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21898

Length: 277 nt

UniGene Fasta

>biog3_v1.0_unigene21898
AATGTAGTAAAGCAGATGGCTGTTATTGCGGCTCGATGTATCAGATCCACCGAGGAGAGGAGACCTTCCATGAACGAAGTTGTGGAGGGGCTTAAACAAGTAAGTCGGAGTATTCCCCTACCCATTTGGAATGGCCTCAAAAGACAAAAGAAGAAACCTACCAGGGAGGGCAAACCTCAGTTGACAGAAAGAAGTGATAAAAATTATGTGGCGGGACAAATGAAGCCTTCTGATAGAAGTGAAAGTTTGAATGATTCTCAAGGAGCTTGAAGTCTTC

Ace file of the UniGene biog3_v1.0_unigene21898

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3004	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1B, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SPN3_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	75%
Blast2go	defense response	GO:0006952	Biological Process	75%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	DNA repair	GO:0006281	Biological Process	75%
Blast2go	nuclease activity	GO:0004518	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	75%
Blast2go	intracellular	GO:0005622	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Excinuclease ABC, C subunit, N-terminal	IPR000305	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRZ4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 140 aas, your sequence is shorter than subject: 90 - 511

Fln protein: NVVKQMAVIAARCIRSTEERRPSMNEVVEGLKQVSRSIPLPIWNGLKRQKKKPTREGKPQLTERSDKNYVAGQMKPSDRSESLNDSQGA*

Protein Length: 91

Fln nts: AATGTAGTAAAGCAGATGGCTGTTATTGCGGCTCGATGTATCAGATCCACCGAGGAGAGGAGACCTTCCATGAACGAAGTTGTGGAGGGGCTTAAACAAGTAAGTCGGAGTATTCCCCTACCCATTTGGAATGGCCTCAAAAGACAAAAGAAGAAACCTACCAGGGAGGGCAAACCTCAGTTGACAGAAAGAAGTGATAAAAATTATGTGGCGGGACAAATGAAGCCTTCTGATAGAAGTGAAAGTTTGAATGATTCTCAAGGAGCTTGAAGTCTTC

Fln Alignment:

biogeco3_mira_c20344___NVVKQMAVIAARCIRSTEERRPSMNEVVEGLKQVSRSIPLPIWNGLKRQKKKPT-REGKPQLTERSDKNYVAGQMKPSDRSESLN
B8LRZ4__________________NTIKHMALIAARCVRSTEERRPSMNEVVEGLKQVSRSIPLPIWDGLKRQKKKPTIRQDKPQLTERSGKHYVAGQMKPSDTIESLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain