SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21890

Length: 198 nt

UniGene Fasta

>biog3_v1.0_unigene21890
AATGTCTGCTGACCCAGAGCTCCCTTTGTTGCTGTCTGCAGCTCTTGTATCACTACTACGAGTTCATCCCGCTTTGGCAGACCATGTGGGATATCTTGGATATGTTCCAAAGCTGGTTGCAGCCATGGCATATGAAGGAAGGAGAGAAACAATGGCCTCAGAAGATGTGAAAACTGCAAATCACTGTCAACCTGGCGA

Ace file of the UniGene biog3_v1.0_unigene21890

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25065	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb\|AEC07904.1\| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	dnaj homolog subfamily c member 13-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	87%
Blast2go	response to starvation	GO:0042594	Biological Process	87%
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	87%
Blast2go	amyloplast organization	GO:0009660	Biological Process	87%
Blast2go	cell division	GO:0051301	Biological Process	87%
Blast2go	negative gravitropism	GO:0009959	Biological Process	87%
Blast2go	endosome organization	GO:0007032	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	87%
Blast2go	late endosome	GO:0005770	Cellular Component	87%
Blast2go	microsome	GO:0005792	Cellular Component	87%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	VQ	IPR008889	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015609	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB41

Fln msg: Distance to subject end: 226 aas, your sequence is shorter than subject: 65 - 251

Fln protein: MSADPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAMAYEGRRETMASEDVKTANHCQPG

Protein Length: 66

Fln nts: A_-_ATGTCTGCTGACCCAGAGCTCCCTTTGTTGCTGTCTGCAGCTCTTGTATCACTACTACGAGTTCATCCCGCTTTGGCAGACCATGTGGGATATCTTGGATATGTTCCAAAGCTGGTTGCAGCCATGGCATATGAAGGAAGGAGAGAAACAATGGCCTCAGAAGATGTGAAAACTGCAAATCACTGTCAACCTGGCGA

Fln Alignment:

biogeco3_mira_c20330___MAYEGRRETMASEDVKTANHCQPG
D5AB41__________________MAYEGRRETMASQDVKTGNHCQPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain