SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21869

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21869
GTACAAGCCACCCGATGGGACCCCTAGAACTTGCAGACTTCATTGGATTAGATGTTTGCCTCTCAATTATGAAGATTCTCCATCACGGGCTTGGAGAAAGCAAATATTCCCCATGCCCACTGCTTGTGCAGTATGTTGATGCAGGGTACCTTGGTCGGAAGAGTGGGAAGGGCGTCTACTCCTACCGTGCATCACCAAGTAATGGTAATCCAAGGTCTCGCATATGAAATCCTCAGGAGAATTAAGTCTAGATAGTCCAAAGAAAATCACAGTTACTAACTAAAAGGGACTTATTTGACGAGCATGGAATTAGTCCCCATGAATAATCCATTCCAAGCAAGGTTGTTGATGCAGTAGTATACATT

Ace file of the UniGene biog3_v1.0_unigene21869 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11376	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxybutyryl-CoA dehydrogenase n=3 Tax=Brassicaceae RepID=Q9LDF5_ARATH	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	3-hydroxybutyryl- dehydrogenase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyacyl-CoA dehydrogenase.	EC:1.1.1.35	-	0.0	80%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid elongation in mitochondria	00062		80%
Blast2go	Fatty acid metabolism	00071		80%
Blast2go	Primary bile acid biosynthesis	00120		80%
Blast2go	Valine, leucine and isoleucine degradation	00280		80%
Blast2go	Geraniol degradation	00281		80%
Blast2go	Lysine degradation	00310		80%
Blast2go	Tryptophan metabolism	00380		80%
Blast2go	Toluene degradation	00623		80%
Blast2go	Butanoate metabolism	00650		80%
Blast2go	Carbon fixation pathways in prokaryotes	00720		80%
Blast2go	Biosynthesis of plant hormones	01070		80%
Blast2go	Metabolic pathways	01100		80%
Blast2go	Biosynthesis of secondary metabolites	01110		80%
Blast2go	3-hydroxybutyryl-CoA dehydrogenase.	EC:1.1.1.157	-	80%

Source	KEGGs	Term	Identity
Blast2go	Benzoate degradation	00362	80%
Blast2go	Butanoate metabolism	00650	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	3-hydroxyacyl-CoA dehydrogenase activity	GO:0003857	Molecular Function	80%
Blast2go	3-hydroxybutyryl-CoA dehydrogenase activity	GO:0008691	Molecular Function	80%
Blast2go	NAD+ binding	GO:0070403	Molecular Function	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7S5

Fln msg: your sequence is shorter than subject: 75 - 296

Fln protein: TSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYRASPSNGNPRSRI*

Protein Length: 76

Fln nts: GTACAAGCCACCCGATGGGACCCCTAGAACTTGCAGACTTCATTGGATTAGATGTTTGCCTCTCAATTATGAAGATTCTCCATCACGGGCTTGGAGAAAGCAAATATTCCCCATGCCCACTGCTTGTGCAGTATGTTGATGCAGGGTACCTTGGTCGGAAGAGTGGGAAGGGCGTCTACTCCTACCGTGCATCACCAAGTAATGGTAATCCAAGGTCTCGCATATGA___AATCCTCAGGAGAATTAAGTCTAGATAGTCCAAAGAAAATCACAGTTACTAACTAAAAGGGACTTATTTGACGAGCATGGAATTAGTCCCCATGAATAATCCATTCCAAGCAAGGTTGTTGATGCAGTAGTATACATT

Fln Alignment:

biogeco3_mira_c20303___TSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYRASPSNGNPRSRI
D5A7S5__________________TSHPMGPLELADFIGLDVCLSIMKILHHGLGESKYSPCPLLVQYVDAGYLGRKSGKGVYSYHAPPNNGNPRSRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain