SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21732

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21732
TCCCACATTGGCACGCTCTTATCGCTTTAGATGATGTGGATGATGTAGAGCAGCTGCGCGCATTGCTTCCGGTTTTACCAGCGAACGATAGCTTAATTCTTGTTACATCCCGTGATAAAAGTGTACTTCAAATTTGGGGATTAATTGAAGATCCATTTATTTACACTCTCGAAGGCCTCAGTCTACAACACTCCGTAGAGCTCTTCTGCTGGCACGCCTTCCATCAACCTGGTCCTCCTGATAAAGTATTTGAGCATCTGGTTAATAAGTTTGTGGATGCCTGCGGTAAATTGCCATTATCTCTTTGTGTTATCGGGGAGCTTCTTCATGGTAAAAAGAATCCTAAGCACTGGGAAGAGCAATTGCGTAAAATGATCCGCAAAACTCTTCCCACGAAGATACACAAGATACTACATT

Ace file of the UniGene biog3_v1.0_unigene21732 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10344	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G8029 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE85_PINMO	-	-	3.00018e-42	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	nbs-lrr protein g8029	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 612 aas, your sequence is shorter than subject: 138 - 1071

Fln protein: PHWHALIALDDVDDVEQLRALLPVLPANDSLILVTSRDKSVLQIWGLIEDPFIYTLEGLSLQHSVELFCWHAFHQPGPPDKVFEHLVNKFVDACGKLPLSLCVIGELLHGKKNPKHWEEQLRKMIRKTLPTKIHKILH

Protein Length: 139

Fln nts: TCCCACATTGGCACGCTCTTATCGCTTTAGATGATGTGGATGATGTAGAGCAGCTGCGCGCATTGCTTCCGGTTTTACCAGCGAACGATAGCTTAATTCTTGTTACATCCCGTGATAAAAGTGTACTTCAAATTTGGGGATTAATTGAAGATCCATTTATTTACACTCTCGAAGGCCTCAGTCTACAACACTCCGTAGAGCTCTTCTGCTGGCACGCCTTCCATCAACCTGGTCCTCCTGATAAAGTATTTGAGCATCTGGTTAATAAGTTTGTGGATGCCTGCGGTAAATTGCCATTATCTCTTTGTGTTATCGGGGAGCTTCTTCATGGTAAAAAGAATCCTAAGCACTGGGAAGAGCAATTGCGTAAAATGATCCGCAAAACTCTTCCCACGAAGATACACAAGATACTACATT

Fln Alignment:

biogeco3_mira_c20114___ALIALDDVDDVEQLRALLPVLPAN---DSLILVTSRDKSVLQIWGLIEDPFIYTLEGLSLQHSVELFCWHAFHQPGPPDKVFEHLVNKFVDACGKLPLSLCVIGELLHGKKNPKHWEEQLRKMIRKTLPTKIHKIL
C0PQE2__________________ALIVLDDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESS-IYRLKGLNRKHSQELFCFHAFGQPHPVVG-FEEVVEKFLDVCDGLPLSLKVLGALLHG-KDLWYWKEQLGK-TSTILPRKVRSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain