SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21718

Length: 399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21718
AATGTAGGTGCTAGGCGTAAGCCGTTTATGAATGCCGTTGAGGCAGCTGATGAGCAAATGTTTCTCAAAGTAGCAGGAAGTAATGCAGAGAACACTGCCTGCCTTGCTGACAAAGACGATAAAGCACCTGAAAATATGGAAGAAAATGTCACTTGTAATGATGATAAAGCAGAAGATTGCGGGGTTCACGTGGACAATGTAACGAATAGCACTGCTTTGCCTTCTGTTGCTAAAGAGCCATTTGTCCCTCAATTGAAAAGGAAATTCACACCACTAGCTACAGAAGCTGAGTTGCAGGAGTTTTTCAATAATATAGGTGGGGAGTGGGCATCTAAAATGAAGAAGCGAAAGATTGTAGACGCTGAAGACTTTGGCGAAGGATTCCCTAAAGGCTACATT

Ace file of the UniGene biog3_v1.0_unigene21718 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6968	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8	-	-	0.0	29%
Blast2go	methyl binding domain protein	-	-	2.07723e-35	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	2.07723e-35	51%
Blast2go	intracellular	GO:0005622	Cellular Component	2.07723e-35	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	AT hook, DNA-binding motif	IPR017956	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LME6-2

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 133 - 425

Fln protein: NVGARRKPFMNAVEAADEQMFLKVAGSNAENTACLADKDDKAPENMEENVTCNDDKAEDCGVHVDNVTNSTALPSVAKEPFVPQLKRKFTPLATEAELQEFFNNIGGEWASKMKKRKIVDAEDFGEGFPKGYI

Protein Length: 134

Fln nts: AATGTAGGTGCTAGGCGTAAGCCGTTTATGAATGCCGTTGAGGCAGCTGATGAGCAAATGTTTCTCAAAGTAGCAGGAAGTAATGCAGAGAACACTGCCTGCCTTGCTGACAAAGACGATAAAGCACCTGAAAATATGGAAGAAAATGTCACTTGTAATGATGATAAAGCAGAAGATTGCGGGGTTCACGTGGACAATGTAACGAATAGCACTGCTTTGCCTTCTGTTGCTAAAGAGCCATTTGTCCCTCAATTGAAAAGGAAATTCACACCACTAGCTACAGAAGCTGAGTTGCAGGAGTTTTTCAATAATATAGGTGGGGAGTGGGCATCTAAAATGAAGAAGCGAAAGATTGTAGACGCTGAAGACTTTGGCGAAGGATTCCCTAAAGGCTACATT

Fln Alignment:

biogeco3_mira_c20097___KDDKAPENMEE------------NVTCNDDKAEDCGVHVDN----VTNSTALPSVAKEPFVPQLKRKFTPLATEAELQEFFNNIGGEWASKMKKRKIVDAEDFGEGFPKGY
Q9LME6-2________________KRGRPPKNKEEIMNLEKRDSAIVNISAFDK--EELVVNLENREGTIVDLSALASVSEDPYEEELRRITVGLKTKEEILGFLEQLNGEWVNIGKKKKVVNACDYGGYLPRGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain